C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026811 St6galnac6 10090 + 2:32599709-32620806 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072111 St6galnac6-201 32608071-32620804 protein_coding
  ENSMUST00000081879 St6galnac6-007 32608464-32620804 protein_coding
  ENSMUST00000095044 St6galnac6-001 32607026-32620806 protein_coding
  ENSMUST00000095045 St6galnac6-202 32599780-32620804 protein_coding
  ENSMUST00000113289 St6galnac6-006 32607011-32614920 protein_coding
  ENSMUST00000113290 St6galnac6-203 32606961-32620804 protein_coding
  ENSMUST00000126636 St6galnac6-011 32607043-32614969 processed_transcript
  ENSMUST00000128811 St6galnac6-010 32609043-32614910 protein_coding
  ENSMUST00000129165 St6galnac6-008 32608717-32612327 protein_coding
  ENSMUST00000131229 St6galnac6-004 32599709-32615124 protein_coding
  ENSMUST00000140983 St6galnac6-005 32599726-32618582 protein_coding
  ENSMUST00000143625 St6galnac6-009 32609013-32614890 processed_transcript
  ENSMUST00000145782 St6galnac6-003 32607019-32620806 processed_transcript
  ENSMUST00000149220 St6galnac6-012 32608085-32616819 processed_transcript
  ENSMUST00000183538 St6galnac6-002 32607040-32620806 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072111ENSMUST00000095044ENSMUST00000095045ENSMUST00000113290ENSMUST00000128811ENSMUST00000131229ENSMUST00000145782ENSMUST00000149220ENSMUST00000183538
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072111 6.130±0.12 N/A 3.408±0.16 4.940±3.13 10.767±0.00 N/A 16.595±2.59 1.708±0.42 6.549±5.67 5.824±0.21 11.334±3.59 6.388±2.20 0.857±0.53 2.439±1.14
ENSMUST00000095044 6.220±0.00 12.156±3.79 2.278±1.01 N/A 4.751±1.27 N/A N/A 1.738±0.00 N/A 4.948±1.58 5.119±0.93 5.536±0.53 0.510±0.00 N/A
ENSMUST00000095045 N/A N/A N/A 2.807±1.65 5.398±0.00 275.835±6.35 N/A 2.222±0.00 7.264±2.89 N/A N/A 4.681±1.12 0.546±0.15 1.242±0.00
ENSMUST00000113290 6.623±3.55 6.293±0.79 N/A 0.932±0.35 5.510±1.05 N/A N/A 0.896±0.18 2.018±0.59 4.823±1.71 N/A 7.059±3.82 0.552±0.09 1.388±0.28
ENSMUST00000128811 N/A N/A N/A N/A N/A N/A 22.715±0.00 N/A 24.575±10.24 N/A N/A N/A N/A N/A
ENSMUST00000131229 N/A N/A N/A N/A N/A 581.320±45.64 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145782 4.368±1.33 14.045±4.14 2.008±0.61 0.764±0.12 3.783±0.16 N/A 5.776±1.11 0.930±0.14 2.908±1.66 4.512±1.33 4.991±1.72 3.840±1.42 0.348±0.07 1.389±0.33
ENSMUST00000149220 3.011±0.70 N/A N/A 0.741±0.18 3.876±0.85 N/A N/A N/A 1.350±0.26 N/A N/A 4.287±0.68 0.219±0.13 N/A
ENSMUST00000183538 3.882±0.75 N/A 1.813±0.05 N/A 3.025±0.23 N/A N/A 1.298±0.16 1.463±0.16 N/A 4.099±0.64 3.745±0.25 0.471±0.18 0.977±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001574 IDA ganglioside biosynthetic process
GO:0001665 IDA alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0006677 IEA glycosylceramide metabolic process
GO:0006687 IEA glycosphingolipid metabolic process
GO:0008373 IDA sialyltransferase activity
GO:0009100 IEA glycoprotein metabolic process
GO:0009312 IDA oligosaccharide biosynthetic process
GO:0009988 IC cell-cell recognition
GO:0016021 IEA integral component of membrane
GO:0097503 IDA:IEA sialylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036913 st6galnac6 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 protein_coding Danio_rerio
ENSG00000160408 ST6GALNAC6 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 protein_coding Homo_sapiens

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