C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 35
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026999 Nup35 10090 + 2:80617236-80658906 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028382 Nup35-001 80638816-80658902 protein_coding
  ENSMUST00000124377 Nup35-002 80638832-80656004 protein_coding
  ENSMUST00000127926 Nup35-004 80644204-80653414 processed_transcript
  ENSMUST00000135305 Nup35-005 80617236-80658906 processed_transcript
  ENSMUST00000144697 Nup35-003 80639264-80646464 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028382ENSMUST00000124377ENSMUST00000144697
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028382 6.123±0.91 3.312±0.49 6.239±1.68 10.372±6.81 5.415±2.94 2.514±0.56 2.328±0.18 5.075±0.40 8.676±8.17 4.599±1.07 3.190±0.53 5.818±1.70 7.525±5.37 18.611±9.75
ENSMUST00000124377 4.745±0.00 15.992±5.75 N/A 12.024±0.00 3.663±0.22 4.562±1.13 N/A 4.483±0.04 6.619±5.95 3.616±0.08 N/A 10.682±2.12 4.657±0.00 N/A
ENSMUST00000144697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.863±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Q8 CIL_0000Q8_0002 CGP 2:80500512-80632361
CIL_0000Q9 CIL_0000Q9_0002 CGP 2:80617045-80658906
CIL_0000QA CIL_0000QA_0002 CGP 2:80617236-82259879

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005643 IEA nuclear pore
GO:0015031 IEA protein transport
GO:0031965 IEA nuclear membrane
GO:0051028 IEA mRNA transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012222 nup35 nucleoporin 35 protein_coding Danio_rerio
ENSG00000163002 NUP35 nucleoporin 35kDa protein_coding Homo_sapiens

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