C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 16 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027411 Vps16 10090 + 2:130424339-130444269 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028900 Vps16-001 130424365-130444269 protein_coding
  ENSMUST00000125098 Vps16-008 130441608-130443399 retained_intron
  ENSMUST00000125973 Vps16-005 130424339-130438453 retained_intron
  ENSMUST00000128994 Vps16-003 130424365-130439917 protein_coding
  ENSMUST00000130258 Vps16-002 130424404-130440296 processed_transcript
  ENSMUST00000131220 Vps16-007 130439630-130441705 retained_intron
  ENSMUST00000132388 Vps16-004 130437636-130439067 retained_intron
  ENSMUST00000134677 Vps16-009 130443167-130443734 retained_intron
  ENSMUST00000137084 Vps16-006 130440322-130441307 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028900ENSMUST00000125098ENSMUST00000125973ENSMUST00000130258ENSMUST00000132388
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028900 8.989±5.96 11.729±0.00 14.410±3.97 23.518±8.25 12.494±2.36 10.855±3.63 6.361±1.25 7.938±2.57 8.159±3.63 6.182±0.00 2.649±1.02 16.934±5.33 8.560±2.89 6.927±0.86
ENSMUST00000125098 N/A N/A 24.772±0.00 37.332±0.00 N/A N/A N/A N/A 40.498±0.00 N/A 6.788±1.55 54.962±3.32 39.035±15.60 N/A
ENSMUST00000125973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.230±5.13 17.418±0.00
ENSMUST00000130258 N/A N/A N/A 34.394±0.00 N/A N/A N/A N/A N/A N/A N/A 38.539±0.00 21.116±0.00 11.430±0.00
ENSMUST00000132388 N/A 23.632±0.00 N/A N/A 30.574±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_00006D CIL_00006D_0002 CGP 2:130406478-130424701
CIL_00012E CIL_00012E_0002 CGP 2:130417247-130444269
CIL_00006B CIL_00006B_0002 CGP 2:130424339-130554026

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005765 IEA lysosomal membrane
GO:0005768 IEA endosome
GO:0005769 IDA early endosome
GO:0005770 IEA late endosome
GO:0005884 IDA actin filament
GO:0006886 IEA intracellular protein transport
GO:0030424 IEA axon
GO:0030897 IEA HOPS complex
GO:0043025 IEA neuronal cell body
GO:0046718 IMP viral entry into host cell
GO:0051015 IEA actin filament binding
GO:0055037 IEA recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059902 vps16 vacuolar protein sorting protein 16 protein_coding Danio_rerio
ENSG00000215305 VPS16 vacuolar protein sorting 16 homolog (S. cerevisiae) protein_coding Homo_sapiens

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