C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAE1 RNA export 1 homolog (S. pombe)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027509 Rae1 10090 + 2:173000117-173015739 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029013 Rae1-001 173000117-173015739 protein_coding
  ENSMUST00000123039 Rae1-004 173011664-173012821 retained_intron
  ENSMUST00000124793 Rae1-003 173006644-173009444 retained_intron
  ENSMUST00000132212 Rae1-002 173000124-173009445 protein_coding
  ENSMUST00000138237 Rae1-005 173012461-173015427 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029013ENSMUST00000124793ENSMUST00000132212
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029013 25.543±5.34 125.977±5.17 20.004±4.38 19.741±11.74 28.135±11.60 21.560±7.93 9.586±1.84 21.832±2.11 20.776±9.36 18.593±2.44 4.895±0.85 39.626±22.25 27.441±15.77 28.163±12.58
ENSMUST00000124793 N/A N/A N/A 14.295±0.00 N/A N/A N/A N/A N/A N/A N/A 16.648±0.00 22.173±0.00 N/A
ENSMUST00000132212 8.661±0.00 N/A N/A 13.966±0.00 N/A 12.781±0.76 5.678±0.00 N/A 6.359±0.45 N/A N/A 28.121±13.42 19.889±5.65 15.169±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_0002XR CIL_0002XR_0002 CGP 2:172977700-173015739

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0071407 IDA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007196 rae1 RAE1 RNA export 1 homolog (S. pombe) protein_coding Danio_rerio
ENSG00000101146 RAE1 ribonucleic acid export 1 protein_coding Homo_sapiens

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