C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: fragile X mental retardation gene 1, autosomal homolog
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027680 Fxr1 10090 + 3:34020079-34069342 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001620 Fxr1-201 34020079-34069342 protein_coding
  ENSMUST00000167354 Fxr1-202 34020079-34069342 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001620ENSMUST00000167354
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001620 N/A 6.612±0.01 6.334±1.23 8.502±0.44 N/A 15.687±2.34 N/A 6.416±0.58 5.051±0.00 84.635±6.42 8.643±0.70 7.931±0.23 56.203±24.66
ENSMUST00000167354 14.080±3.11 17.893±1.14 22.819±5.88 8.266±1.53 7.164±0.99 N/A 10.984±0.96 17.690±7.04 11.206±0.76 29.146±9.32 26.589±27.40 65.803±35.66 130.113±91.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081N CIL_00081N_0002 VISTA 3:33582396-34183856
CIL_00081O CIL_00081O_0002 VISTA 3:33605209-34206178
CIL_0008UV CIL_0008UV_0002 VISTA 3:33803627-34405807
CIL_0001FR CIL_0001FR_0002 CGP 3:33812362-34069342
CIL_0007MF CIL_0007MF_0002 UCNEbase 3:33882710-35464507

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002151 IDA G-quadruplex RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0007517 IMP muscle organ development
GO:0016020 IEA membrane
GO:0017148 IDA negative regulation of translation
GO:0030154 IEA cell differentiation
GO:0043034 IDA costamere
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022968 fxr1 fragile X mental retardation, autosomal homolog 1 protein_coding Danio_rerio
ENSG00000114416 FXR1 fragile X mental retardation, autosomal homolog 1 protein_coding Homo_sapiens

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