C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclin L1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027829 Ccnl1 10090 - 3:65946151-65958249 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029416 Ccnl1-001 65946151-65958249 protein_coding
  ENSMUST00000122919 Ccnl1-004 65946151-65958199 retained_intron
  ENSMUST00000129002 Ccnl1-002 65946151-65958162 nonsense_mediated_decay
  ENSMUST00000132998 Ccnl1-012 65950407-65951868 retained_intron
  ENSMUST00000135719 Ccnl1-003 65946195-65958032 nonsense_mediated_decay
  ENSMUST00000142153 Ccnl1-005 65946509-65958163 retained_intron
  ENSMUST00000144810 Ccnl1-009 65947954-65956856 nonsense_mediated_decay
  ENSMUST00000145186 Ccnl1-010 65949901-65956889 nonsense_mediated_decay
  ENSMUST00000146284 Ccnl1-011 65951249-65952993 retained_intron
  ENSMUST00000148623 Ccnl1-008 65951434-65957653 retained_intron
  ENSMUST00000149160 Ccnl1-006 65948892-65958181 retained_intron
  ENSMUST00000149729 Ccnl1-014 65946782-65947998 retained_intron
  ENSMUST00000150304 Ccnl1-013 65948508-65950978 retained_intron
  ENSMUST00000154585 Ccnl1-007 65946151-65958169 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029416ENSMUST00000122919ENSMUST00000129002ENSMUST00000135719ENSMUST00000142153ENSMUST00000149160ENSMUST00000154585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029416 8.797±2.53 53.428±13.54 11.047±0.41 18.607±4.32 55.298±33.64 41.023±9.11 2.390±1.00 7.309±4.89 10.631±5.52 26.863±12.39 1.528±0.04 85.379±12.85 9.029±1.11 9.453±3.25
ENSMUST00000122919 N/A N/A 4.262±0.00 3.981±1.30 N/A N/A N/A N/A 4.389±1.27 N/A 0.607±0.03 N/A N/A N/A
ENSMUST00000129002 4.699±0.38 N/A 8.872±1.93 5.404±0.00 5.295±1.21 N/A 1.778±0.14 2.325±0.49 7.600±3.17 4.962±0.00 1.648±0.56 8.643±0.17 6.316±1.03 3.490±0.49
ENSMUST00000135719 N/A N/A N/A 4.781±0.00 6.797±0.00 N/A 1.973±0.88 2.229±0.00 N/A N/A 2.216±0.55 21.010±10.55 10.004±3.94 5.146±0.92
ENSMUST00000142153 4.976±0.73 N/A 6.102±1.16 4.216±0.00 4.586±1.27 N/A 1.568±0.68 2.203±0.22 4.006±2.00 7.401±0.72 1.404±0.09 7.928±3.62 5.059±1.64 1.185±0.00
ENSMUST00000149160 4.111±1.32 54.075±19.30 N/A 2.536±0.00 34.385±5.24 8.478±1.20 1.081±0.23 N/A 2.684±0.86 10.135±3.71 N/A 44.600±15.70 N/A N/A
ENSMUST00000154585 N/A N/A N/A N/A 4.554±0.00 N/A 1.716±0.00 1.812±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081H CIL_00081H_0002 VISTA 3:65626895-66230134
CIL_00028X CIL_00028X_0002 CGP 3:65666228-65958249
CIL_00028W CIL_00028W_0002 CGP 3:65946151-66296837

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 IEA RNA processing
GO:0008023 ISA transcription elongation factor complex
GO:0019901 IEA protein kinase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012140 ccnl1b cyclin L1b protein_coding Danio_rerio
ENSDARG00000055124 ccnl1a cyclin L1a protein_coding Danio_rerio
ENSG00000163660 CCNL1 cyclin L1 protein_coding Homo_sapiens

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