C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 4933434E20 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027942 4933434E20Rik 10090 + 3:90051636-90068347 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029551 4933434E20Rik-201 90062796-90068347 protein_coding
  ENSMUST00000029552 4933434E20Rik-004 90052837-90059097 protein_coding
  ENSMUST00000068798 4933434E20Rik-003 90052871-90062442 protein_coding
  ENSMUST00000159064 4933434E20Rik-006 90051636-90062018 protein_coding
  ENSMUST00000159202 4933434E20Rik-008 90052829-90058651 nonsense_mediated_decay
  ENSMUST00000160640 4933434E20Rik-001 90052814-90063341 protein_coding
  ENSMUST00000161874 4933434E20Rik-009 90053595-90058867 retained_intron
  ENSMUST00000161918 4933434E20Rik-002 90052871-90062445 nonsense_mediated_decay
  ENSMUST00000162114 4933434E20Rik-005 90052842-90060994 protein_coding
  ENSMUST00000162390 4933434E20Rik-010 90058645-90062296 retained_intron
  ENSMUST00000162595 4933434E20Rik-007 90052854-90053694 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029551ENSMUST00000068798ENSMUST00000159064ENSMUST00000160640ENSMUST00000161874ENSMUST00000161918ENSMUST00000162114ENSMUST00000162390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029551 2.367±0.17 2.870±0.51 4.577±0.62 3.732±1.97 2.916±0.72 1.279±0.00 1.962±0.44 2.269±0.32 1.733±0.25 6.972±0.97 N/A 8.004±2.91 0.960±0.10 9.827±1.56
ENSMUST00000068798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.370±4.82 12.666±0.41 11.270±1.54 N/A
ENSMUST00000159064 8.830±3.57 N/A N/A N/A 7.147±3.59 2.949±1.12 5.360±0.91 5.795±1.47 3.033±0.68 N/A 17.092±1.37 9.106±2.96 N/A 33.203±0.37
ENSMUST00000160640 2.854±0.49 N/A 6.290±0.57 5.111±2.16 N/A 1.577±0.00 N/A N/A 2.459±0.34 N/A N/A 7.199±0.86 2.859±0.96 N/A
ENSMUST00000161874 N/A N/A N/A N/A N/A N/A N/A N/A 7.455±0.00 N/A N/A N/A 31.905±7.23 N/A
ENSMUST00000161918 9.874±2.82 7.281±2.55 16.933±0.13 10.376±4.21 6.864±1.87 5.943±2.23 10.537±0.93 11.909±2.57 6.838±1.96 8.441±1.28 12.880±1.77 12.540±3.78 14.744±6.21 19.986±0.56
ENSMUST00000162114 5.054±0.38 2.447±0.22 N/A N/A 5.278±0.76 3.034±0.41 4.304±0.32 6.794±0.61 4.228±0.78 6.954±0.47 N/A 5.549±0.59 6.880±1.31 N/A
ENSMUST00000162390 6.353±0.00 N/A N/A 7.194±0.00 11.353±0.00 6.282±2.08 N/A N/A 5.167±0.53 N/A N/A 19.438±0.82 12.379±2.77 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0016616 IEA oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0050662 IEA coenzyme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055613 C16H1orf43 (1 of 2) chromosome 1 open reading frame 43 protein_coding Danio_rerio
ENSDARG00000086115 CZv9_NA879H1orf43 (2 of 2) chromosome 1 open reading frame 43 protein_coding Danio_rerio
ENSG00000143612 C1orf43 chromosome 1 open reading frame 43 protein_coding Homo_sapiens

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