C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family A (ABC1), member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028125 Abca4 10090 + 3:122044443-122180061 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000013995 Abca4-001 122044443-122180061 protein_coding
  ENSMUST00000126552 Abca4-007 122112030-122112571 processed_transcript
  ENSMUST00000132199 Abca4-002 122046577-122097742 processed_transcript
  ENSMUST00000136358 Abca4-005 122173115-122180061 retained_intron
  ENSMUST00000136624 Abca4-008 122121754-122126467 retained_intron
  ENSMUST00000137616 Abca4-011 122163818-122170326 retained_intron
  ENSMUST00000139239 Abca4-009 122128271-122132729 processed_transcript
  ENSMUST00000140913 Abca4-006 122120041-122128657 retained_intron
  ENSMUST00000141135 Abca4-004 122132003-122180061 processed_transcript
  ENSMUST00000144949 Abca4-010 122162317-122164319 retained_intron
  ENSMUST00000150738 Abca4-003 122074456-122087931 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000013995ENSMUST00000132199ENSMUST00000136358ENSMUST00000140913ENSMUST00000141135ENSMUST00000144949
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000013995 0.225±0.00 N/A N/A 0.293±0.13 0.080±0.04 0.044±0.00 0.058±0.01 0.881±0.43 0.017±0.01 N/A 0.042±0.01 1.312±0.44 0.230±0.16 0.083±0.00
ENSMUST00000132199 N/A N/A N/A N/A N/A 0.056±0.01 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136358 N/A 0.412±0.00 0.132±0.00 N/A N/A 0.083±0.00 N/A N/A 0.058±0.00 N/A N/A N/A 0.691±0.00 N/A
ENSMUST00000140913 N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A 0.039±0.00 N/A N/A N/A N/A 0.225±0.00
ENSMUST00000141135 0.695±0.03 0.227±0.14 0.202±0.04 0.284±0.05 0.225±0.06 0.115±0.05 0.782±0.23 2.165±0.61 0.118±0.08 2.408±0.32 0.425±0.13 1.918±0.70 1.088±0.50 0.115±0.04
ENSMUST00000144949 N/A N/A N/A N/A N/A 0.241±0.07 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DI CIL_0009DI_0002 VISTA 3:121653542-122254391
CIL_0009DJ CIL_0009DJ_0002 VISTA 3:121747471-122349247
CIL_0005PB CIL_0005PB_0003 CGP 3:121953229-122180061
CIL_0009DH CIL_0009DH_0002 VISTA 3:121992915-122594267

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004012 IMP phospholipid-translocating ATPase activity
GO:0005524 IEA ATP binding
GO:0005548 IMP phospholipid transporter activity
GO:0005887 TAS integral component of plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006649 IMP phospholipid transfer to membrane
GO:0007601 IMP visual perception
GO:0042626 TAS ATPase activity, coupled to transmembrane movement of substances
GO:0045332 IMP phospholipid translocation
GO:0045494 IMP photoreceptor cell maintenance
GO:0050896 IEA response to stimulus
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057169 abca4a ATP-binding cassette, sub-family A (ABC1), member 4a protein_coding Danio_rerio
ENSDARG00000062661 abca4b ATP-binding cassette, sub-family A (ABC1), member 4b protein_coding Danio_rerio
ENSG00000198691 ABCA4 ATP-binding cassette, sub-family A (ABC1), member 4 protein_coding Homo_sapiens

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