C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetraspanin 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028152 Tspan5 10090 + 3:138742195-138904433 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029800 Tspan5-001 138742195-138904433 protein_coding
  ENSMUST00000119993 Tspan5-003 138809874-138903674 protein_coding
  ENSMUST00000121826 Tspan5-004 138860493-138902657 protein_coding
  ENSMUST00000127772 Tspan5-008 138742505-138896861 nonsense_mediated_decay
  ENSMUST00000135629 Tspan5-006 138778207-138894518 protein_coding
  ENSMUST00000142001 Tspan5-007 138778206-138902494 nonsense_mediated_decay
  ENSMUST00000142890 Tspan5-002 138742305-138904426 nonsense_mediated_decay
  ENSMUST00000146356 Tspan5-009 138782854-138896871 protein_coding
  ENSMUST00000153336 Tspan5-005 138742769-138894484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029800ENSMUST00000119993ENSMUST00000121826ENSMUST00000142890ENSMUST00000146356
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029800 10.056±4.36 43.033±15.54 22.453±0.54 27.373±1.01 11.598±3.12 7.917±0.85 1.498±0.20 8.500±1.94 0.961±0.55 14.988±0.40 0.556±0.19 21.287±6.54 1.246±0.37 2.878±1.11
ENSMUST00000119993 N/A N/A N/A 9.509±0.00 N/A N/A N/A N/A N/A N/A N/A 2.786±0.57 0.556±0.23 0.311±0.00
ENSMUST00000121826 N/A N/A N/A N/A N/A N/A N/A N/A 0.326±0.00 N/A N/A N/A N/A 4.534±1.62
ENSMUST00000142890 1.713±0.14 15.429±5.09 6.174±0.00 7.394±2.67 1.843±0.05 1.143±0.00 0.538±0.05 2.891±0.39 0.283±0.11 3.113±1.04 0.478±0.09 2.718±0.52 0.430±0.09 1.799±0.89
ENSMUST00000146356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.131±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LO CIL_0008LO_0002 VISTA 3:138442669-139045155

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0019899 IPI enzyme binding
GO:0045747 IEA positive regulation of Notch signaling pathway
GO:0051604 IDA protein maturation
GO:0090002 IEA establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070449 tspan5b tetraspanin 5b protein_coding Danio_rerio
ENSDARG00000070456 tspan5b tetraspanin 5b protein_coding Danio_rerio
ENSDARG00000086033 tspan5a tetraspanin 5a protein_coding Danio_rerio
ENSG00000168785 TSPAN5 tetraspanin 5 protein_coding Homo_sapiens

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