C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 3110043O21 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028300 3110043O21Rik 10090 - 4:35191285-35226175 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000084724 3110043O21Rik-007 35191285-35226123 protein_coding
  ENSMUST00000108126 3110043O21Rik-002 35191287-35225834 protein_coding
  ENSMUST00000108127 3110043O21Rik-001 35191287-35225880 protein_coding
  ENSMUST00000130538 3110043O21Rik-004 35218409-35226123 processed_transcript
  ENSMUST00000142628 3110043O21Rik-006 35197044-35206130 retained_intron
  ENSMUST00000149138 3110043O21Rik-005 35218593-35226123 processed_transcript
  ENSMUST00000156472 3110043O21Rik-003 35212423-35226175 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084724ENSMUST00000108126ENSMUST00000108127ENSMUST00000149138
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084724 N/A N/A N/A N/A N/A N/A N/A N/A 0.360±0.00 N/A N/A 0.727±0.17 N/A N/A
ENSMUST00000108126 12.725±6.31 1.903±0.41 2.046±0.10 6.351±0.38 8.753±4.57 0.776±0.09 2.920±0.78 1.196±0.45 1.088±0.39 2.186±0.65 0.965±0.28 3.794±2.40 0.947±0.29 2.354±0.56
ENSMUST00000108127 11.401±4.59 1.418±0.28 3.893±0.32 7.970±2.29 4.353±1.32 1.857±0.58 4.115±0.97 2.311±0.55 1.704±0.60 3.170±1.05 3.406±0.80 3.381±1.66 2.430±1.04 3.048±0.95
ENSMUST00000149138 N/A 1.930±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061J CIL_00061J_0002 CGP 4:35152056-35226175
CIL_00061K CIL_00061K_0002 CGP 4:35191285-36951747

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005764 ISS lysosome
GO:0005768 ISS endosome
GO:0005776 ISS autophagic vacuole
GO:0006897 ISS endocytosis
GO:0006914 ISS autophagy
GO:0017137 IPI Rab GTPase binding
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011837 C13H9orf72 chromosome 9 open reading frame 72 protein_coding Danio_rerio
ENSG00000147894 C9orf72 chromosome 9 open reading frame 72 protein_coding Homo_sapiens

Loading