C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 5830415F09 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028331 5830415F09Rik 10090 - 4:46376505-46389437 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030015 5830415F09Rik-001 46379864-46389437 protein_coding
  ENSMUST00000086563 5830415F09Rik-003 46376979-46389423 protein_coding
  ENSMUST00000151903 5830415F09Rik-002 46376505-46389418 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030015ENSMUST00000086563ENSMUST00000151903
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030015 2.973±1.08 2.145±0.52 2.366±0.39 3.162±0.32 3.157±0.55 2.092±0.89 1.873±0.08 2.893±0.66 6.094±4.94 2.546±0.28 0.938±0.27 5.345±2.06 4.080±1.14 5.869±0.54
ENSMUST00000086563 N/A N/A N/A N/A N/A 0.594±0.14 N/A 0.353±0.00 N/A 0.614±0.00 N/A 1.492±0.00 N/A N/A
ENSMUST00000151903 0.164±0.00 0.391±0.00 N/A 0.324±0.01 N/A 0.274±0.00 N/A N/A 2.086±1.21 0.361±0.00 0.069±0.00 0.470±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0002 VISTA 4:46052102-46653592
CIL_000853 CIL_000853_0002 VISTA 4:46066953-46671362
CIL_0009AR CIL_0009AR_0002 VISTA 4:46066953-46668597
CIL_00029R CIL_00029R_0002 CGP 4:46343609-46389437
CIL_00029S CIL_00029S_0002 CGP 4:46376505-46413506

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037245 C1H9orf156 chromosome 9 open reading frame 156 protein_coding Danio_rerio
ENSG00000136932 C9orf156 chromosome 9 open reading frame 156 protein_coding Homo_sapiens

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