C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 4C, cysteine peptidase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028550 Atg4c 10090 + 4:99193934-99259787 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030279 Atg4c-001 99193934-99259787 protein_coding
  ENSMUST00000152121 Atg4c-002 99218091-99221695 processed_transcript
  ENSMUST00000180278 Atg4c-201 99194147-99259783 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030279ENSMUST00000152121ENSMUST00000180278
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030279 2.761±0.52 1.538±0.25 2.762±0.27 2.486±1.12 1.370±0.67 0.917±0.50 1.067±0.15 2.933±0.49 1.762±0.75 2.165±0.49 1.921±0.42 2.531±1.31 1.775±0.93 3.509±2.11
ENSMUST00000152121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.271±0.00
ENSMUST00000180278 0.498±0.07 0.876±0.00 2.834±0.73 1.324±0.19 3.052±0.00 0.536±0.13 0.301±0.00 0.707±0.28 1.025±0.28 0.750±0.18 0.705±0.18 3.251±1.38 2.424±0.94 1.087±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H9 CIL_0008H9_0002 VISTA 4:98994411-99595982
CIL_0002G5 CIL_0002G5_0002 CGP 4:99030954-99259787
CIL_00085L CIL_00085L_0002 VISTA 4:99053164-99654624
CIL_00089A CIL_00089A_0002 VISTA 4:99074142-99675600

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 IEA autophagic vacuole assembly
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0005576 IEA extracellular region
GO:0005737 ISS cytoplasm
GO:0006508 IEA proteolysis
GO:0006914 ISS autophagy
GO:0008233 IEA peptidase activity
GO:0008234 ISA cysteine-type peptidase activity
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044373 atg4c autophagy-related 4C (yeast) protein_coding Danio_rerio
ENSG00000125703 ATG4C autophagy related 4C, cysteine peptidase protein_coding Homo_sapiens

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