C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 54
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028786 Tmem54 10090 + 4:129105548-129111626 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030575 Tmem54-002 129105574-129111626 protein_coding
  ENSMUST00000030577 Tmem54-003 129105601-129111517 protein_coding
  ENSMUST00000106064 Tmem54-001 129105548-129111626 protein_coding
  ENSMUST00000148979 Tmem54-004 129106869-129110544 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000030575ENSMUST00000030577ENSMUST00000106064ENSMUST00000148979
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000030575 N/A N/A N/A N/A 0.046±0.00 0.862±0.20 N/A N/A 0.171±0.07 1.208±0.00 3.048±0.00
ENSMUST00000030577 2.967±0.66 3.356±0.50 3.011±0.47 63.376±20.94 N/A 1.414±0.27 0.153±0.04 3.154±2.49 N/A 1.593±0.27 3.887±1.08
ENSMUST00000106064 5.347±0.90 9.227±0.97 2.844±0.85 117.430±29.35 0.139±0.00 1.792±0.75 0.821±0.44 5.550±3.46 0.164±0.05 2.107±0.82 8.014±4.17
ENSMUST00000148979 N/A N/A N/A N/A N/A N/A 0.317±0.13 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097K CIL_00097K_0002 VISTA 4:128504346-129105789

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035875 tmem54 transmembrane protein 54 protein_coding Danio_rerio
ENSDARG00000059247 TMEM54 (2 of 2) transmembrane protein 54 protein_coding Danio_rerio
ENSG00000121900 TMEM54 transmembrane protein 54 protein_coding Homo_sapiens

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