C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028794 A3galt2 10090 + 4:128755364-128769298 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030585 A3galt2-002 128759258-128769298 protein_coding
  ENSMUST00000106077 A3galt2-001 128755364-128768588 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030585ENSMUST00000106077
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030585 0.151±0.02 0.141±0.04 0.047±0.00 0.564±0.48 0.111±0.07 0.072±0.04 0.070±0.01 0.068±0.01 0.019±0.00 0.084±0.07 0.036±0.00 0.197±0.10 0.081±0.04 0.026±0.01
ENSMUST00000106077 0.115±0.00 0.222±0.07 0.072±0.00 0.538±0.18 0.244±0.09 0.108±0.08 0.030±0.00 0.099±0.08 0.019±0.00 N/A 0.043±0.02 0.509±0.26 0.033±0.00 0.048±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F1 CIL_0008F1_0002 VISTA 4:128414851-129016970
CIL_00097K CIL_00097K_0002 VISTA 4:128504346-129105789

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001962 IGI alpha-1,3-galactosyltransferase activity
GO:0005794 ISS Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0006688 ISS glycosphingolipid biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030259 ISS lipid glycosylation
GO:0031982 ISS vesicle
GO:0046872 IEA metal ion binding
GO:0047276 IEA N-acetyllactosaminide 3-alpha-galactosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000184389 A3GALT2 alpha 1,3-galactosyltransferase 2 protein_coding Homo_sapiens

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