C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled coil domain containing 28B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028795 Ccdc28b 10090 - 4:129619274-129623947 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030586 Ccdc28b-001 129619274-129623947 protein_coding
  ENSMUST00000106035 Ccdc28b-002 129620476-129623878 protein_coding
  ENSMUST00000123943 Ccdc28b-006 129620749-129622725 processed_transcript
  ENSMUST00000124630 Ccdc28b-003 129619276-129621421 processed_transcript
  ENSMUST00000126777 Ccdc28b-007 129619274-129620592 processed_transcript
  ENSMUST00000141361 Ccdc28b-009 129619275-129620915 retained_intron
  ENSMUST00000150357 Ccdc28b-005 129621003-129623886 protein_coding
  ENSMUST00000151838 Ccdc28b-010 129619276-129623837 nonsense_mediated_decay
  ENSMUST00000152290 Ccdc28b-008 129623298-129623899 retained_intron
  ENSMUST00000152708 Ccdc28b-004 129622162-129623844 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaTestisENSMUST00000030586ENSMUST00000124630
Transcript ID Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000030586 35.698±8.05 17.579±0.00 10.592±0.56 N/A N/A N/A
ENSMUST00000124630 N/A N/A N/A 64.380±0.00 37.215±1.69 17.598±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0002 VISTA 4:129413466-130014337

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0042384 IEA cilium assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011222 ccdc28b coiled-coil domain containing 28B protein_coding Danio_rerio
ENSG00000160050 CCDC28B coiled-coil domain containing 28B protein_coding Homo_sapiens

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