C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polyhomeotic-like 2 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028796 Phc2 10090 + 4:128654702-128752881 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030588 Phc2-201 128654702-128752881 protein_coding
  ENSMUST00000106079 Phc2-004 128727585-128752881 protein_coding
  ENSMUST00000106080 Phc2-001 128688795-128752881 protein_coding
  ENSMUST00000120946 Phc2-011 128727971-128743471 protein_coding
  ENSMUST00000133439 Phc2-007 128727710-128745008 protein_coding
  ENSMUST00000134421 Phc2-009 128727982-128747132 protein_coding
  ENSMUST00000136377 Phc2-002 128654738-128712194 protein_coding
  ENSMUST00000138445 Phc2-010 128727682-128748217 nonsense_mediated_decay
  ENSMUST00000143632 Phc2-005 128727581-128752881 nonsense_mediated_decay
  ENSMUST00000147572 Phc2-008 128727933-128748074 protein_coding
  ENSMUST00000148723 Phc2-003 128688738-128705663 retained_intron
  ENSMUST00000155653 Phc2-006 128710164-128724424 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030588ENSMUST00000106079ENSMUST00000106080ENSMUST00000143632
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030588 4.046±0.24 6.329±1.75 N/A 8.885±0.00 3.064±0.23 2.322±0.00 N/A N/A 1.136±0.17 3.719±0.00 N/A 6.001±1.08 N/A 1.374±0.00
ENSMUST00000106079 17.521±6.83 22.157±2.79 30.803±1.62 40.952±24.82 19.612±8.04 24.476±7.20 11.668±1.02 16.427±4.37 6.942±3.84 21.139±13.00 6.620±1.27 25.545±9.02 17.782±9.48 9.197±4.66
ENSMUST00000106080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.539±0.00 N/A 1.383±0.00
ENSMUST00000143632 N/A N/A N/A N/A N/A N/A N/A N/A 2.082±0.00 N/A N/A N/A 6.224±1.18 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F1 CIL_0008F1_0002 VISTA 4:128414851-129016970
CIL_00097K CIL_00097K_0002 VISTA 4:128504346-129105789

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000792 IDA heterochromatin
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007275 IEA multicellular organismal development
GO:0007283 IGI spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0031519 IDA PcG protein complex
GO:0035102 IEA PRC1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013224 phc2b polyhomeotic-like 2b protein_coding Danio_rerio
ENSDARG00000056695 phc2a polyhomeotic-like 2a (Drosophila) protein_coding Danio_rerio
ENSG00000134686 PHC2 polyhomeotic homolog 2 (Drosophila) protein_coding Homo_sapiens

Loading