C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tyrosyl-tRNA synthetase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028811 Yars 10090 + 4:129189760-129219607 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000106054 Yars-001 129189760-129219607 protein_coding
  ENSMUST00000128287 Yars-008 129189902-129197441 retained_intron
  ENSMUST00000133992 Yars-003 129197115-129210578 nonsense_mediated_decay
  ENSMUST00000137591 Yars-007 129212696-129218663 processed_transcript
  ENSMUST00000140708 Yars-004 129197234-129208615 processed_transcript
  ENSMUST00000146106 Yars-005 129209538-129210852 retained_intron
  ENSMUST00000147248 Yars-006 129213762-129214934 retained_intron
  ENSMUST00000148619 Yars-002 129212244-129215726 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106054ENSMUST00000137591ENSMUST00000148619
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106054 10.306±1.43 8.632±1.78 12.366±0.78 25.660±10.18 8.064±2.31 5.150±0.36 8.877±0.48 21.589±4.97 8.284±0.05 13.434±2.31 12.465±2.54 28.016±8.19 5.610±0.52
ENSMUST00000137591 N/A N/A N/A 109.235±0.00 N/A N/A N/A N/A N/A N/A 60.729±0.00 87.945±14.45 24.847±0.00
ENSMUST00000148619 N/A N/A N/A N/A 1.835±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DR CIL_0006DR_0002 CGP 4:129189760-129261404

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0004831 IEA tyrosine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006437 IEA tyrosyl-tRNA aminoacylation
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035913 yars tyrosyl-tRNA synthetase protein_coding Danio_rerio
ENSG00000134684 YARS tyrosyl-tRNA synthetase protein_coding Homo_sapiens

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