C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: period circadian clock 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028957 Per3 10090 - 4:151003652-151044665 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000103204 Per3-001 151003652-151044665 protein_coding
  ENSMUST00000128283 Per3-002 151024190-151044665 retained_intron
  ENSMUST00000136398 Per3-004 151011437-151044665 nonsense_mediated_decay
  ENSMUST00000138052 Per3-005 151003786-151016145 processed_transcript
  ENSMUST00000138584 Per3-003 151011437-151031497 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103204ENSMUST00000136398ENSMUST00000138052
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103204 3.057±0.75 2.958±1.42 10.141±0.33 1.252±1.04 2.394±0.60 1.573±0.44 1.898±0.13 2.232±0.70 0.614±0.20 2.516±0.82 3.084±1.74 3.736±1.65 0.439±0.25 0.756±0.40
ENSMUST00000136398 N/A 2.425±0.40 N/A N/A 1.362±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138052 2.332±0.76 4.519±1.71 15.339±2.28 0.883±0.14 4.109±1.15 1.160±0.20 2.204±0.00 1.795±0.34 0.673±0.32 6.209±0.00 3.526±1.23 4.528±1.38 0.881±0.12 0.863±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0002 VISTA 4:150524120-151125978

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007623 IDA circadian rhythm
GO:0019900 IPI kinase binding
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032922 IEA circadian regulation of gene expression
GO:0045187 ISS regulation of circadian sleep/wake cycle, sleep

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010519 per3 period homolog 3 (Drosophila) protein_coding Danio_rerio
ENSG00000049246 PER3 period circadian clock 3 protein_coding Homo_sapiens

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