C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gamma-aminobutyric acid (GABA) A receptor, subunit delta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029054 Gabrd 10090 - 4:155384980-155398112 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030925 Gabrd-001 155384980-155398112 protein_coding
  ENSMUST00000129892 Gabrd-003 155388565-155398036 processed_transcript
  ENSMUST00000150423 Gabrd-002 155384980-155398047 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030925ENSMUST00000150423
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030925 0.258±0.10 0.563±0.11 0.237±0.06 5.796±7.97 0.121±0.06 0.436±0.31 0.047±0.03 0.230±0.06 0.030±0.02 0.410±0.17 0.136±0.06 0.293±0.23 0.412±0.18 0.085±0.05
ENSMUST00000150423 0.091±0.05 N/A 0.059±0.02 0.465±0.58 0.037±0.02 0.138±0.10 0.066±0.00 0.037±0.01 0.013±0.00 0.138±0.05 0.057±0.00 0.104±0.05 0.065±0.02 0.015±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QV CIL_0007QV_0002 VISTA 4:154934679-155536167

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0007165 IEA signal transduction
GO:0007268 IEA synaptic transmission
GO:0030054 IEA cell junction
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059763 gabrd gamma-aminobutyric acid (GABA) A receptor, delta protein_coding Danio_rerio
ENSG00000187730 GABRD gamma-aminobutyric acid (GABA) A receptor, delta protein_coding Homo_sapiens

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