C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: scavenger receptor cysteine rich family, 4 domains
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029699 Srcrb4d 10090 - 5:135960211-135974531 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054895 Srcrb4d-003 135960224-135962327 protein_coding
  ENSMUST00000111150 Srcrb4d-004 135960822-135962271 protein_coding
  ENSMUST00000111152 Srcrb4d-001 135960223-135974497 protein_coding
  ENSMUST00000111153 Srcrb4d-002 135960211-135974531 protein_coding
  ENSMUST00000153823 Srcrb4d-007 135963212-135965874 protein_coding
  ENSMUST00000154181 Srcrb4d-005 135966139-135974440 protein_coding
  ENSMUST00000154696 Srcrb4d-006 135963422-135967920 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054895ENSMUST00000111150ENSMUST00000111152ENSMUST00000111153
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054895 2.267±0.74 1.387±0.44 1.001±0.10 0.606±0.18 2.242±0.32 1.816±0.83 0.370±0.15 1.417±0.36 1.585±0.51 0.664±0.21 0.507±0.08 1.601±0.51 2.099±1.14 0.196±0.04
ENSMUST00000111150 3.071±0.00 4.066±0.71 N/A N/A 2.957±1.23 2.298±0.00 0.466±0.00 0.831±0.00 1.503±0.28 0.919±0.17 0.638±0.14 2.657±0.00 2.094±0.00 0.292±0.09
ENSMUST00000111152 N/A N/A N/A 0.138±0.00 N/A N/A 0.026±0.00 N/A N/A N/A N/A 0.413±0.03 N/A 0.018±0.00
ENSMUST00000111153 0.268±0.00 0.760±0.20 0.211±0.00 0.191±0.12 N/A 0.212±0.04 0.024±0.00 0.199±0.00 N/A 0.118±0.00 N/A 0.893±0.58 0.149±0.05 0.041±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006E6 CIL_0006E6_0002 CGP 5:135908409-135974531
CIL_0006E7 CIL_0006E7_0002 CGP 5:135960211-135988624

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0006898 IEA receptor-mediated endocytosis
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060592 SSC4D scavenger receptor cysteine rich family, 4 domains protein_coding Danio_rerio
ENSG00000146700 SSC4D scavenger receptor cysteine rich family, 4 domains protein_coding Homo_sapiens

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