C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine-rich repeats and WD repeat domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029703 Lrwd1 10090 - 5:136122772-136136074 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006301 Lrwd1-001 136122772-136136074 protein_coding
  ENSMUST00000128255 Lrwd1-005 136123692-136130250 protein_coding
  ENSMUST00000132976 Lrwd1-004 136123067-136136001 retained_intron
  ENSMUST00000139908 Lrwd1-002 136131675-136136062 retained_intron
  ENSMUST00000142272 Lrwd1-006 136123075-136125559 retained_intron
  ENSMUST00000148475 Lrwd1-003 136129401-136136022 retained_intron
  ENSMUST00000149673 Lrwd1-008 136132307-136133877 retained_intron
  ENSMUST00000150406 Lrwd1-007 136133032-136135997 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006301ENSMUST00000132976ENSMUST00000142272ENSMUST00000148475ENSMUST00000150406
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006301 9.753±2.82 9.157±2.13 9.002±1.33 11.389±8.47 9.579±4.46 10.011±2.11 3.334±0.80 6.534±0.81 19.114±17.51 10.401±2.79 2.926±0.35 15.154±6.12 8.773±3.82 95.222±41.08
ENSMUST00000132976 N/A N/A N/A N/A 2.321±0.85 N/A N/A N/A N/A 2.075±0.00 N/A 5.295±0.00 N/A N/A
ENSMUST00000142272 N/A N/A N/A 1.432±0.00 2.845±0.00 N/A N/A N/A N/A N/A N/A 2.232±0.29 N/A N/A
ENSMUST00000148475 N/A 2.284±0.00 N/A N/A 4.425±0.00 N/A N/A N/A N/A 2.655±0.22 N/A 4.287±0.75 N/A N/A
ENSMUST00000150406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.092±0.00 10.022±0.00 33.977±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0005634 ISS nucleus
GO:0005664 ISS nuclear origin of replication recognition complex
GO:0005721 ISS pericentric heterochromatin
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006260 IEA DNA replication
GO:0006325 ISS chromatin organization
GO:0008327 ISS methyl-CpG binding
GO:0016568 IEA chromatin modification
GO:0031933 ISS telomeric heterochromatin
GO:0035064 ISS methylated histone binding
GO:0071169 ISS establishment of protein localization to chromatin

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035147 lrwd1 leucine-rich repeats and WD repeat domain containing 1 protein_coding Danio_rerio
ENSG00000161036 LRWD1 leucine-rich repeats and WD repeat domain containing 1 protein_coding Homo_sapiens

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