C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single-stranded DNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029911 Ssbp1 10090 + 6:40471352-40481823 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031971 Ssbp1-002 40471415-40478587 protein_coding
  ENSMUST00000114779 Ssbp1-001 40471352-40481823 protein_coding
  ENSMUST00000117411 Ssbp1-004 40471475-40480992 protein_coding
  ENSMUST00000117830 Ssbp1-005 40471526-40476511 protein_coding
  ENSMUST00000121360 Ssbp1-003 40471468-40480995 protein_coding
  ENSMUST00000141801 Ssbp1-006 40476479-40477450 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031971ENSMUST00000114779ENSMUST00000117411ENSMUST00000121360
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031971 1.570±0.45 N/A N/A 4.297±0.00 2.290±1.17 N/A 2.111±0.83 1.708±0.48 7.148±4.70 1.405±0.31 N/A 4.665±0.24 N/A 0.900±0.07
ENSMUST00000114779 N/A N/A N/A 2.925±1.37 0.957±0.40 N/A 1.106±0.39 1.065±0.31 1.185±0.25 0.994±0.03 1.746±0.34 4.194±0.31 N/A 0.616±0.16
ENSMUST00000117411 4.030±0.77 15.922±5.12 6.539±0.32 7.368±0.04 3.373±1.41 3.398±1.39 4.748±0.78 4.078±0.92 7.908±4.86 3.255±0.55 12.664±1.07 11.056±7.07 15.283±11.23 4.053±5.32
ENSMUST00000121360 4.223±1.09 7.655±2.53 13.783±4.03 7.270±3.16 8.998±5.44 7.580±2.58 1.230±0.14 3.974±1.84 6.914±3.95 5.598±1.04 2.995±0.86 13.270±6.17 6.713±0.77 2.322±1.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A1 CIL_0003A1_0002 CGP 6:40442863-40481823
CIL_0003A0 CIL_0003A0_0002 CGP 6:40471352-40492239

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0006260 IEA DNA replication
GO:0042645 ISS mitochondrial nucleoid
GO:0044822 IEA poly(A) RNA binding
GO:0051096 IEA positive regulation of helicase activity
GO:0070062 IEA extracellular vesicular exosome
GO:0070584 IMP mitochondrion morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039350 ssbp1 single-stranded DNA binding protein 1 protein_coding Danio_rerio
ENSG00000106028 SSBP1 single-stranded DNA binding protein 1, mitochondrial protein_coding Homo_sapiens

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