C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 5, member a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029915 Clec5a 10090 - 6:40574894-40585821 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031975 Clec5a-003 40576717-40585821 processed_transcript
  ENSMUST00000101491 Clec5a-002 40574894-40585803 protein_coding
  ENSMUST00000129948 Clec5a-001 40577850-40585795 protein_coding
  ENSMUST00000177178 Clec5a-004 40577960-40585790 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031975ENSMUST00000101491ENSMUST00000129948ENSMUST00000177178
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031975 0.208±0.10 0.258±0.10 0.330±0.04 0.201±0.21 0.402±0.12 0.299±0.12 0.258±0.11 0.115±0.05 1.902±0.85 0.416±0.30 0.073±0.05 0.294±0.14 0.128±0.07 0.109±0.07
ENSMUST00000101491 0.045±0.01 0.067±0.00 0.055±0.02 0.010±0.00 0.022±0.00 0.251±0.00 0.047±0.01 0.037±0.02 0.566±0.34 0.151±0.08 0.018±0.00 0.091±0.09 0.016±0.00 0.014±0.00
ENSMUST00000129948 0.317±0.07 N/A 0.360±0.17 0.089±0.05 0.647±0.13 N/A 0.117±0.02 0.124±0.08 1.446±0.60 0.413±0.18 0.079±0.01 0.170±0.00 0.155±0.08 0.100±0.02
ENSMUST00000177178 N/A N/A 0.213±0.00 N/A 0.336±0.15 0.458±0.00 0.137±0.00 N/A N/A 0.570±0.03 0.087±0.04 0.483±0.04 N/A 0.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A2 CIL_0003A2_0002 CGP 6:40571357-40585821
CIL_0003A5 CIL_0003A5_0002 CGP 6:40574894-40613310

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001618 IDA virus receptor activity
GO:0002076 IDA osteoblast development
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0009615 IDA response to virus
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0030099 IGI myeloid cell differentiation
GO:0030246 IEA carbohydrate binding
GO:0033033 IDA negative regulation of myeloid cell apoptotic process
GO:0043066 IDA negative regulation of apoptotic process
GO:0045087 IDA innate immune response
GO:0050715 IMP positive regulation of cytokine secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000258227 CLEC5A C-type lectin domain family 5, member A protein_coding Homo_sapiens

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