C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: makorin, ring finger protein, 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029922 Mkrn1 10090 - 6:39397804-39420462 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031985 Mkrn1-001 39397804-39420462 protein_coding
  ENSMUST00000051671 Mkrn1-005 39400760-39420358 protein_coding
  ENSMUST00000114822 Mkrn1-002 39405539-39420298 protein_coding
  ENSMUST00000114823 Mkrn1-004 39397804-39419776 protein_coding
  ENSMUST00000122874 Mkrn1-008 39401275-39405081 processed_transcript
  ENSMUST00000122996 Mkrn1-003 39400754-39420067 protein_coding
  ENSMUST00000146785 Mkrn1-006 39404811-39419757 protein_coding
  ENSMUST00000150575 Mkrn1-007 39399143-39404730 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031985ENSMUST00000051671ENSMUST00000114822ENSMUST00000114823ENSMUST00000122996ENSMUST00000150575
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031985 9.092±2.17 11.326±2.25 15.053±0.24 30.691±16.73 10.567±1.31 60.730±6.34 11.009±6.13 11.843±0.26 23.564±20.29 18.022±1.80 2.101±0.70 16.240±4.06 11.833±3.69 58.812±12.79
ENSMUST00000051671 3.571±0.00 N/A N/A N/A 4.951±0.00 N/A 2.420±0.11 N/A 20.030±1.57 N/A 1.081±0.19 8.569±0.06 9.689±2.71 46.764±0.26
ENSMUST00000114822 N/A 8.869±0.79 N/A N/A N/A N/A 5.086±0.00 N/A 54.498±5.25 N/A 2.107±0.18 N/A 24.085±9.74 N/A
ENSMUST00000114823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 64.566±21.14
ENSMUST00000122996 N/A N/A N/A 16.214±0.20 N/A N/A N/A N/A N/A N/A N/A N/A 4.306±0.00 N/A
ENSMUST00000150575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.577±0.00 32.705±0.05 338.357±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZU CIL_0008ZU_0002 VISTA 6:38939568-39543498
CIL_000305 CIL_000305_0002 CGP 6:39381175-39420462

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0003682 IDA chromatin binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041665 mkrn1 makorin, ring finger protein, 1 protein_coding Danio_rerio
ENSG00000133606 MKRN1 makorin ring finger protein 1 protein_coding Homo_sapiens

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