C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD52 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030166 Rad52 10090 + 6:119902698-119922828 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032269 Rad52-201 119902698-119922823 protein_coding
  ENSMUST00000159291 Rad52-007 119902734-119919168 processed_transcript
  ENSMUST00000159356 Rad52-006 119902705-119913097 processed_transcript
  ENSMUST00000160558 Rad52-012 119913951-119918786 retained_intron
  ENSMUST00000160877 Rad52-005 119902705-119913724 processed_transcript
  ENSMUST00000161045 Rad52-002 119902703-119922828 nonsense_mediated_decay
  ENSMUST00000161816 Rad52-003 119902728-119921315 retained_intron
  ENSMUST00000161860 Rad52-008 119913238-119914218 processed_transcript
  ENSMUST00000162009 Rad52-010 119915252-119918931 processed_transcript
  ENSMUST00000162205 Rad52-004 119902698-119915335 processed_transcript
  ENSMUST00000162255 Rad52-009 119902734-119919168 processed_transcript
  ENSMUST00000162461 Rad52-001 119902703-119922823 protein_coding
  ENSMUST00000162590 Rad52-011 119902739-119920813 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032269ENSMUST00000159291ENSMUST00000160877ENSMUST00000161045ENSMUST00000161816ENSMUST00000162009ENSMUST00000162255ENSMUST00000162461ENSMUST00000162590
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032269 N/A N/A N/A N/A N/A N/A N/A 0.445±0.00 1.258±0.00 0.973±0.00 0.838±0.00 2.238±0.00 1.510±0.00 N/A
ENSMUST00000159291 N/A 2.451±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160877 5.688±1.80 8.316±3.96 N/A 3.664±0.68 7.976±3.37 5.512±1.78 1.135±0.07 2.348±0.73 1.277±0.14 5.902±1.73 N/A 11.089±3.30 N/A N/A
ENSMUST00000161045 1.904±0.00 1.948±0.58 2.910±0.57 4.452±0.16 3.188±0.00 1.491±0.00 0.835±0.00 1.032±0.00 2.406±0.00 2.212±0.48 N/A 2.989±0.81 2.087±0.04 2.637±0.74
ENSMUST00000161816 2.647±0.27 2.824±0.54 N/A 3.691±0.57 2.105±0.20 2.118±0.57 1.179±0.13 1.600±0.30 1.709±0.68 2.897±0.27 0.709±0.15 3.412±1.19 3.110±1.03 0.886±0.00
ENSMUST00000162009 N/A N/A N/A 27.933±0.00 N/A N/A N/A N/A N/A N/A N/A 25.498±0.00 23.086±8.06 N/A
ENSMUST00000162255 N/A N/A N/A N/A 3.554±0.00 3.800±0.00 1.140±0.00 1.485±0.34 N/A 2.886±0.28 N/A 6.150±0.14 N/A N/A
ENSMUST00000162461 2.502±0.24 N/A 2.218±0.29 N/A 2.101±0.70 2.183±0.42 N/A 1.466±0.10 2.544±1.33 2.001±0.00 1.015±0.34 3.990±1.06 3.334±0.55 N/A
ENSMUST00000162590 N/A 2.532±0.86 N/A 9.717±0.31 4.275±0.40 4.086±0.88 1.568±0.22 2.673±0.61 3.020±1.76 4.116±0.81 N/A 6.581±0.33 N/A 2.112±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TY CIL_0007TY_0002 VISTA 6:119665436-120266145
CIL_0008AW CIL_0008AW_0002 VISTA 6:119874234-120475208
CIL_0006C0 CIL_0006C0_0002 CGP 6:119902698-120038672

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000724 IDA double-strand break repair via homologous recombination
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006310 ISS DNA recombination
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005274 rad52 RAD52 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000002016 RAD52 RAD52 homolog (S. cerevisiae) protein_coding Homo_sapiens

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