C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ELKS/RAB6-interacting/CAST family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030172 Erc1 10090 - 6:119570796-119848167 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032279 Erc1-201 119570804-119825226 protein_coding
  ENSMUST00000079582 Erc1-005 119772706-119848102 protein_coding
  ENSMUST00000183703 Erc1-001 119570796-119848150 protein_coding
  ENSMUST00000183741 Erc1-006 119823985-119826460 retained_intron
  ENSMUST00000183872 Erc1-011 119721278-119796914 processed_transcript
  ENSMUST00000183880 Erc1-004 119574577-119848115 nonsense_mediated_decay
  ENSMUST00000183911 Erc1-007 119575315-119848167 protein_coding
  ENSMUST00000184320 Erc1-010 119575013-119743444 nonsense_mediated_decay
  ENSMUST00000184838 Erc1-002 119575245-119848134 nonsense_mediated_decay
  ENSMUST00000184864 Erc1-009 119573728-119848059 protein_coding
  ENSMUST00000185139 Erc1-003 119572630-119848099 nonsense_mediated_decay
  ENSMUST00000185143 Erc1-008 119575530-119848089 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032279ENSMUST00000183703ENSMUST00000183872ENSMUST00000183911ENSMUST00000184838ENSMUST00000184864ENSMUST00000185139
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032279 1.473±0.00 2.024±0.00 N/A N/A 2.272±0.00 3.774±0.00 1.954±0.84 N/A 0.574±0.00 N/A 0.944±0.36 N/A 2.916±0.56 1.266±0.09
ENSMUST00000183703 1.770±0.51 2.189±0.73 0.770±0.05 4.780±1.68 2.269±1.64 1.517±0.46 N/A 1.090±0.34 2.107±1.20 1.786±0.58 0.630±0.18 2.522±1.11 3.201±0.00 1.496±0.10
ENSMUST00000183872 N/A N/A N/A 8.597±0.00 N/A N/A N/A N/A N/A N/A N/A 11.196±0.00 15.873±3.07 17.546±0.00
ENSMUST00000183911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.347±0.00 9.040±4.59 4.218±0.00
ENSMUST00000184838 N/A N/A N/A 2.887±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.370±0.00 2.508±0.03 N/A
ENSMUST00000185139 N/A 1.458±0.41 N/A N/A 1.915±0.49 N/A 1.639±0.00 N/A 0.710±0.00 1.156±0.26 N/A N/A N/A 1.461±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C1 CIL_0006C1_0002 CGP 6:119479668-119848167

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0007252 IEA I-kappaB phosphorylation
GO:0008385 IEA IkappaB kinase complex
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0017137 IDA Rab GTPase binding
GO:0030165 ISS PDZ domain binding
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009941 erc1a ELKS/RAB6-interacting/CAST family member 1a protein_coding Danio_rerio
ENSDARG00000031930 erc1b ELKS/RAB6-interacting/CAST family member 1b protein_coding Danio_rerio
ENSDARG00000076014 ERC1 (3 of 3) ELKS/RAB6-interacting/CAST family member 1 protein_coding Danio_rerio
ENSG00000082805 ERC1 ELKS/RAB6-interacting/CAST family member 1 protein_coding Homo_sapiens

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