C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 53, member B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030956 Fam53b 10090 - 7:132712082-132813886 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065371 Fam53b-006 132712084-132786919 protein_coding
  ENSMUST00000097998 Fam53b-002 132712088-132813886 protein_coding
  ENSMUST00000097999 Fam53b-001 132712082-132813528 protein_coding
  ENSMUST00000106165 Fam53b-003 132759268-132813095 protein_coding
  ENSMUST00000106166 Fam53b-007 132759268-132786935 protein_coding
  ENSMUST00000106168 Fam53b-008 132713365-132776916 protein_coding
  ENSMUST00000106169 Fam53b-004 132712806-132802764 protein_coding
  ENSMUST00000134946 Fam53b-009 132760103-132813729 protein_coding
  ENSMUST00000140865 Fam53b-010 132779136-132807380 protein_coding
  ENSMUST00000146460 Fam53b-011 132779247-132780323 processed_transcript
  ENSMUST00000148303 Fam53b-005 132779306-132802750 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065371ENSMUST00000097998ENSMUST00000097999ENSMUST00000106168ENSMUST00000106169
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065371 6.588±3.67 32.438±15.40 2.959±0.00 2.694±0.59 7.630±1.65 3.117±0.00 1.982±0.53 N/A 4.632±3.54 8.259±3.75 2.434±0.55 6.116±1.82 2.236±1.54 1.245±0.67
ENSMUST00000097998 2.365±0.44 N/A 0.686±0.09 1.684±0.00 4.673±2.11 1.584±0.00 N/A 1.722±0.38 0.684±0.00 4.833±0.00 0.909±0.00 3.140±0.72 1.351±0.16 0.387±0.00
ENSMUST00000097999 3.961±0.57 6.502±0.20 1.095±0.51 1.728±0.34 6.556±1.06 2.251±0.51 1.493±0.55 1.890±0.49 0.580±0.12 6.461±0.85 2.539±0.93 3.351±0.32 1.029±0.53 0.523±0.05
ENSMUST00000106168 N/A N/A N/A N/A 2.637±0.00 N/A N/A N/A 4.437±0.76 N/A 1.533±0.28 4.077±0.00 N/A N/A
ENSMUST00000106169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.819±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_00084V CIL_00084V_0002 VISTA 7:132507589-133108550

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016156 fam53b family with sequence similarity 53, member B protein_coding Danio_rerio
ENSG00000189319 FAM53B family with sequence similarity 53, member B protein_coding Homo_sapiens

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