C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 175, member B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030965 Fam175b 10090 + 7:132859225-132885111 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000084497 Fam175b-001 132859225-132885111 protein_coding
  ENSMUST00000106161 Fam175b-002 132859244-132881309 protein_coding
  ENSMUST00000129552 Fam175b-003 132859249-132885108 nonsense_mediated_decay
  ENSMUST00000134784 Fam175b-007 132859307-132878614 processed_transcript
  ENSMUST00000138436 Fam175b-005 132879375-132885110 retained_intron
  ENSMUST00000144225 Fam175b-004 132859249-132875731 retained_intron
  ENSMUST00000147786 Fam175b-006 132859237-132880881 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084497ENSMUST00000106161ENSMUST00000129552ENSMUST00000138436ENSMUST00000147786
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084497 6.297±1.82 4.643±2.12 9.994±0.55 11.901±3.13 6.062±1.53 5.157±0.92 5.144±0.12 9.457±0.76 6.294±0.69 7.415±0.55 6.824±0.59 6.477±2.76 12.752±2.63 10.895±0.76
ENSMUST00000106161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.713±0.00 N/A
ENSMUST00000129552 1.036±0.00 3.232±1.30 N/A 3.706±0.00 1.169±0.00 1.164±0.00 N/A 1.316±0.19 1.046±0.00 N/A 0.817±0.00 3.192±1.89 4.839±2.76 3.341±0.00
ENSMUST00000138436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.141±0.00 N/A N/A
ENSMUST00000147786 N/A N/A N/A 13.026±0.00 N/A N/A N/A N/A N/A N/A N/A 26.847±0.00 27.037±6.36 21.544±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_00084V CIL_00084V_0002 VISTA 7:132507589-133108550
CIL_0001V2 CIL_0001V2_0002 CGP 7:132859225-132986391

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0031593 ISS polyubiquitin binding
GO:0070552 ISS BRISC complex
GO:0071497 IGI cellular response to freezing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015770 fam175b family with sequence similarity 175, member B protein_coding Danio_rerio
ENSG00000165660 FAM175B family with sequence similarity 175, member B protein_coding Homo_sapiens

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