C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 9, X chromosome
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031010 Usp9x 10090 + X:13071498-13173328 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000089302 Usp9x-001 13071514-13173328 protein_coding
  ENSMUST00000124097 Usp9x-003 13129327-13133782 retained_intron
  ENSMUST00000133997 Usp9x-005 13160857-13169898 protein_coding
  ENSMUST00000139764 Usp9x-004 13071514-13122161 retained_intron
  ENSMUST00000149021 Usp9x-007 13113684-13123233 protein_coding
  ENSMUST00000169594 Usp9x-002 13071498-13123449 protein_coding
  ENSMUST00000174762 Usp9x-006 13129060-13132570 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089302ENSMUST00000133997ENSMUST00000169594
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089302 7.103±1.49 4.291±0.31 10.222±0.40 15.303±2.75 4.037±1.56 2.029±0.88 6.422±0.46 7.303±1.48 5.787±0.97 7.527±0.10 6.062±2.98 7.856±6.22 22.383±9.71 3.878±0.74
ENSMUST00000133997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.325±3.48 N/A
ENSMUST00000169594 N/A 3.041±0.24 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QE CIL_0005QE_0002 CGP X:12675369-13173328
CIL_0005QB CIL_0005QB_0002 CGP X:13071498-13294052

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IGI in utero embryonic development
GO:0001764 IEA neuron migration
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0008234 IEA cysteine-type peptidase activity
GO:0009791 IMP post-embryonic development
GO:0016020 IEA membrane
GO:0016579 IEA protein deubiquitination
GO:0021698 IMP cerebellar cortex structural organization
GO:0021766 IMP hippocampus development
GO:0030426 IEA growth cone
GO:0030509 IEA BMP signaling pathway
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0045177 IDA apical part of cell
GO:0048675 IMP axon extension
GO:0070410 IEA co-SMAD binding
GO:0071560 IMP cellular response to transforming growth factor beta stimulus
GO:1990138 IGI neuron projection extension

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013708 usp9 ubiquitin specific peptidase 9 protein_coding Danio_rerio
ENSG00000124486 USP9X ubiquitin specific peptidase 9, X-linked protein_coding Homo_sapiens

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