C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho GTPase activating protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031389 Arhgap4 10090 - X:73891442-73921870 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064376 Arhgap4-001 73894352-73911330 protein_coding
  ENSMUST00000114404 Arhgap4-013 73894676-73911229 protein_coding
  ENSMUST00000114405 Arhgap4-018 73891442-73911336 protein_coding
  ENSMUST00000114406 Arhgap4-002 73894358-73911296 protein_coding
  ENSMUST00000114407 Arhgap4-009 73894532-73911271 protein_coding
  ENSMUST00000123283 Arhgap4-014 73906778-73911293 nonsense_mediated_decay
  ENSMUST00000124798 Arhgap4-017 73900109-73905656 protein_coding
  ENSMUST00000127163 Arhgap4-007 73894532-73911271 retained_intron
  ENSMUST00000128329 Arhgap4-011 73899313-73921870 retained_intron
  ENSMUST00000130976 Arhgap4-003 73894532-73911271 nonsense_mediated_decay
  ENSMUST00000140393 Arhgap4-019 73894538-73911271 nonsense_mediated_decay
  ENSMUST00000142925 Arhgap4-015 73896411-73897426 processed_transcript
  ENSMUST00000143536 Arhgap4-012 73899317-73900738 processed_transcript
  ENSMUST00000143696 Arhgap4-020 73896814-73898066 protein_coding
  ENSMUST00000145159 Arhgap4-010 73894532-73911271 retained_intron
  ENSMUST00000147510 Arhgap4-006 73894532-73911271 retained_intron
  ENSMUST00000148319 Arhgap4-005 73894532-73911271 retained_intron
  ENSMUST00000149135 Arhgap4-004 73906385-73911298 processed_transcript
  ENSMUST00000149774 Arhgap4-016 73896871-73899626 protein_coding
  ENSMUST00000151600 Arhgap4-008 73894532-73911271 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastLiverLungMuscleOvaryPlacentaTestisENSMUST00000064376ENSMUST00000114404ENSMUST00000114407ENSMUST00000128329ENSMUST00000145159ENSMUST00000147510ENSMUST00000149774
Transcript ID Adipose Breast Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064376 N/A 16.978±3.87 N/A 4.342±0.00 N/A N/A N/A N/A
ENSMUST00000114404 N/A 17.701±0.54 N/A N/A N/A 3.002±0.00 N/A N/A
ENSMUST00000114407 N/A N/A 5.295±0.00 N/A N/A N/A 2.036±0.00 N/A
ENSMUST00000128329 N/A N/A N/A N/A N/A 4.051±0.00 N/A N/A
ENSMUST00000145159 3.336±0.00 12.072±0.68 5.380±0.00 9.989±5.52 4.299±0.00 N/A N/A 0.243±0.00
ENSMUST00000147510 N/A N/A N/A N/A N/A N/A N/A 0.196±0.00
ENSMUST00000149774 N/A 74.593±21.18 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001US CIL_0001US_0002 CGP X:73793359-73896105
CIL_00068C CIL_00068C_0002 CGP X:73891442-73921870

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005100 IEA Rho GTPase activator activity
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005874 IEA microtubule
GO:0007165 IEA signal transduction
GO:0007399 IEA nervous system development
GO:0010764 IEA negative regulation of fibroblast migration
GO:0030426 IEA growth cone
GO:0030517 IEA negative regulation of axon extension
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015003 arhgap4b Rho GTPase activating protein 4b protein_coding Danio_rerio
ENSDARG00000039265 arhgap4a Rho GTPase activating protein 4a protein_coding Danio_rerio
ENSG00000089820 ARHGAP4 Rho GTPase activating protein 4 protein_coding Homo_sapiens

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