C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 41
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031433 Rbm41 10090 - X:139889511-139998595 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033810 Rbm41-003 139944236-139998551 protein_coding
  ENSMUST00000087400 Rbm41-201 139889511-139998595 protein_coding
  ENSMUST00000113007 Rbm41-001 139943405-139998542 protein_coding
  ENSMUST00000113011 Rbm41-002 139943373-139998557 protein_coding
  ENSMUST00000135126 Rbm41-006 139968365-139998536 processed_transcript
  ENSMUST00000138635 Rbm41-005 139967581-139994082 retained_intron
  ENSMUST00000148703 Rbm41-004 139992357-139998566 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033810ENSMUST00000087400ENSMUST00000113007ENSMUST00000113011ENSMUST00000135126ENSMUST00000138635ENSMUST00000148703
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033810 N/A 0.232±0.04 N/A 0.212±0.09 0.467±0.00 0.111±0.01 0.165±0.00 0.107±0.06 0.328±0.00 N/A 0.728±0.00 N/A 0.079±0.00
ENSMUST00000087400 N/A N/A N/A N/A N/A 0.110±0.03 0.063±0.00 N/A N/A N/A 0.212±0.08 N/A 0.036±0.00
ENSMUST00000113007 N/A N/A N/A N/A N/A N/A N/A 0.184±0.04 N/A 0.122±0.00 0.180±0.00 N/A 0.045±0.00
ENSMUST00000113011 N/A 0.224±0.03 0.461±0.00 0.363±0.08 0.227±0.16 0.309±0.00 0.294±0.06 0.207±0.04 0.559±0.09 0.270±0.12 0.302±0.14 0.353±0.00 0.054±0.03
ENSMUST00000135126 N/A 0.391±0.00 N/A N/A 0.036±0.00 N/A N/A 0.126±0.00 N/A N/A 0.380±0.00 N/A 0.169±0.01
ENSMUST00000138635 0.128±0.00 0.512±0.19 N/A 0.149±0.10 N/A N/A 0.257±0.00 N/A N/A N/A N/A N/A 0.063±0.03
ENSMUST00000148703 N/A N/A N/A N/A N/A N/A 0.136±0.00 0.084±0.02 N/A N/A 0.162±0.01 N/A 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AD CIL_0006AD_0002 CGP X:139889511-140062712

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054096 rbm41 RNA binding motif protein 41 protein_coding Danio_rerio
ENSG00000089682 RBM41 RNA binding motif protein 41 protein_coding Homo_sapiens

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