C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET domain containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031671 Setd6 10090 + 8:95715915-95719010 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034096 Setd6-001 95715932-95719010 protein_coding
  ENSMUST00000126888 Setd6-005 95716162-95717237 processed_transcript
  ENSMUST00000141900 Setd6-002 95716611-95718519 processed_transcript
  ENSMUST00000148727 Setd6-004 95715915-95716781 processed_transcript
  ENSMUST00000154052 Setd6-003 95716620-95718066 processed_transcript
  ENSMUST00000154593 Setd6-006 95717009-95718871 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034096ENSMUST00000126888ENSMUST00000141900ENSMUST00000154593
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034096 2.939±0.72 13.060±2.59 5.822±0.45 6.634±3.09 3.027±2.33 4.402±1.75 2.044±0.35 4.016±0.41 4.517±2.05 3.669±0.39 4.279±0.50 5.173±2.52 13.526±12.74 1.051±0.49
ENSMUST00000126888 2.220±0.90 N/A 2.999±0.45 2.218±0.00 N/A N/A 1.548±0.00 1.219±0.00 1.846±0.00 2.516±0.00 N/A 6.333±0.00 7.513±0.00 0.903±0.00
ENSMUST00000141900 N/A N/A N/A 14.554±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.882±0.00
ENSMUST00000154593 N/A N/A 2.909±0.42 2.906±0.49 N/A N/A 1.219±0.00 N/A 3.938±1.90 N/A 1.839±0.35 9.435±4.33 4.226±0.88 2.121±1.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_0004IY CIL_0004IY_0002 CGP 8:95676980-95719010
CIL_0004IZ CIL_0004IZ_0002 CGP 8:95715915-95807462

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0016279 ISS protein-lysine N-methyltransferase activity
GO:0018026 ISS peptidyl-lysine monomethylation
GO:0032088 ISS negative regulation of NF-kappaB transcription factor activity
GO:0050727 ISS regulation of inflammatory response
GO:0051059 IEA NF-kappaB binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043986 setd6 SET domain containing 6 protein_coding Danio_rerio
ENSG00000103037 SETD6 SET domain containing 6 protein_coding Homo_sapiens

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