C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: BUD13 homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032077 Bud13 10090 + 9:46283008-46298783 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074957 Bud13-001 46283008-46298783 protein_coding
  ENSMUST00000124887 Bud13-004 46288247-46298783 nonsense_mediated_decay
  ENSMUST00000138498 Bud13-002 46283008-46294099 retained_intron
  ENSMUST00000154247 Bud13-003 46288269-46290541 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074957ENSMUST00000124887ENSMUST00000138498
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074957 3.911±1.21 2.192±0.86 4.679±0.40 5.623±2.31 3.073±0.78 2.004±1.11 2.207±0.58 2.430±0.43 2.723±1.60 2.854±1.06 2.383±0.22 5.245±4.77 11.713±7.42 3.609±2.84
ENSMUST00000124887 N/A N/A N/A 4.308±0.00 N/A 4.085±1.87 N/A 1.927±0.43 N/A 2.844±0.00 N/A 4.783±0.96 13.291±0.00 N/A
ENSMUST00000138498 0.214±0.00 N/A N/A N/A 0.334±0.00 N/A N/A N/A N/A 0.516±0.01 N/A 0.912±0.17 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RC CIL_0007RC_0002 VISTA 9:45818249-46421546
CIL_0008EK CIL_0008EK_0002 VISTA 9:46081147-46681838

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006666 BUD13 BUD13 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000137656 BUD13 BUD13 homolog (S. cerevisiae) protein_coding Homo_sapiens

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