C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032376 Usp3 10090 - 9:66514637-66593142 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034940 Usp3-004 66517877-66592958 retained_intron
  ENSMUST00000098613 Usp3-002 66517227-66593036 protein_coding
  ENSMUST00000124519 Usp3-006 66545462-66566926 retained_intron
  ENSMUST00000124694 Usp3-007 66526976-66540351 processed_transcript
  ENSMUST00000127569 Usp3-001 66514637-66593142 protein_coding
  ENSMUST00000132255 Usp3-010 66518249-66520339 retained_intron
  ENSMUST00000139547 Usp3-003 66516234-66593000 nonsense_mediated_decay
  ENSMUST00000139952 Usp3-005 66547867-66576038 processed_transcript
  ENSMUST00000150840 Usp3-009 66518408-66520820 retained_intron
  ENSMUST00000154476 Usp3-008 66526661-66530402 retained_intron
  ENSMUST00000174387 Usp3-011 66518075-66593006 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034940ENSMUST00000098613ENSMUST00000127569ENSMUST00000139547ENSMUST00000139952ENSMUST00000150840ENSMUST00000174387
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034940 N/A N/A 3.457±0.64 5.281±0.37 N/A N/A N/A N/A 1.741±0.43 N/A 0.880±0.14 N/A 3.388±0.15 2.250±0.43
ENSMUST00000098613 2.888±1.18 13.852±1.55 N/A 4.512±0.00 10.531±4.70 17.631±1.24 1.392±0.04 4.408±1.42 2.708±1.29 6.865±2.47 0.605±0.14 25.140±3.16 N/A 1.335±0.42
ENSMUST00000127569 1.628±0.53 2.105±0.38 4.000±0.15 2.105±1.26 1.870±0.58 2.886±0.25 0.978±0.18 1.536±0.18 1.344±0.30 1.766±0.16 0.320±0.09 6.259±1.53 0.904±0.48 1.305±0.59
ENSMUST00000139547 4.087±1.30 4.357±0.75 5.086±0.78 10.806±6.72 5.113±2.12 5.562±1.99 1.731±0.11 7.945±0.60 3.017±0.75 4.687±0.15 0.709±0.09 11.047±2.90 2.718±1.28 0.605±0.23
ENSMUST00000139952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.997±5.61 14.794±0.00
ENSMUST00000150840 N/A N/A N/A 9.245±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174387 N/A N/A 3.152±0.00 N/A N/A N/A N/A N/A 1.524±0.04 N/A 1.414±0.31 9.859±2.18 3.521±1.73 3.199±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OX CIL_0004OX_0002 CGP 9:66508459-66593142

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000278 IEA mitotic cell cycle
GO:0000790 IEA nuclear chromatin
GO:0001046 IEA core promoter sequence-specific DNA binding
GO:0003682 IEA chromatin binding
GO:0004221 IEA ubiquitin thiolesterase activity
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0008270 IEA zinc ion binding
GO:0016578 IEA histone deubiquitination
GO:0031647 IEA regulation of protein stability
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0042393 IEA histone binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045641 usp3 ubiquitin specific peptidase 3 protein_coding Danio_rerio
ENSG00000140455 USP3 ubiquitin specific peptidase 3 protein_coding Homo_sapiens

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