C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 6820408C15 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032680 6820408C15Rik 10090 + 2:152415587-152444330 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039961 6820408C15Rik-001 152415587-152444330 protein_coding
  ENSMUST00000128737 6820408C15Rik-003 152427662-152439643 protein_coding
  ENSMUST00000153713 6820408C15Rik-002 152427635-152444329 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039961ENSMUST00000128737ENSMUST00000153713
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039961 0.151±0.11 0.075±0.02 0.188±0.03 0.667±0.22 0.111±0.02 N/A 0.442±0.00 0.352±0.00 0.169±0.04 1.901±0.77 N/A 2.773±1.26 0.089±0.04 21.667±4.08
ENSMUST00000128737 0.054±0.00 N/A 0.133±0.00 0.951±0.00 0.160±0.00 0.159±0.01 N/A N/A N/A 2.865±0.78 0.084±0.00 2.969±0.31 0.068±0.03 19.957±8.62
ENSMUST00000153713 0.044±0.00 0.126±0.08 N/A 0.097±0.01 0.077±0.01 0.047±0.01 N/A N/A N/A N/A 0.038±0.00 0.865±0.00 0.033±0.01 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000094037 C11H20orf96 chromosome 20 open reading frame 96 protein_coding Danio_rerio
ENSG00000196476 C20orf96 chromosome 20 open reading frame 96 protein_coding Homo_sapiens

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