C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled coil domain containing 88A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032740 Ccdc88a 10090 + 11:29373658-29510808 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040182 Ccdc88a-001 29373658-29510808 protein_coding
  ENSMUST00000109477 Ccdc88a-007 29373777-29423411 protein_coding
  ENSMUST00000123561 Ccdc88a-002 29470354-29504106 protein_coding
  ENSMUST00000137227 Ccdc88a-005 29456496-29461228 processed_transcript
  ENSMUST00000140194 Ccdc88a-004 29485979-29503518 protein_coding
  ENSMUST00000144450 Ccdc88a-006 29493930-29497860 processed_transcript
  ENSMUST00000155854 Ccdc88a-003 29463888-29482639 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040182ENSMUST00000109477ENSMUST00000123561ENSMUST00000140194ENSMUST00000155854
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040182 0.432±0.25 0.214±0.00 1.400±0.75 9.578±3.33 0.299±0.12 0.138±0.06 0.118±0.06 0.346±0.47 0.655±0.15 0.080±0.01 1.938±1.29 0.703±0.24 1.485±0.31
ENSMUST00000109477 N/A 1.091±0.32 N/A N/A 0.789±0.00 0.349±0.14 N/A 0.054±0.02 N/A N/A 2.365±0.91 N/A N/A
ENSMUST00000123561 N/A N/A N/A N/A 0.432±0.00 0.276±0.02 N/A 0.048±0.00 N/A N/A N/A N/A 4.718±0.36
ENSMUST00000140194 N/A N/A N/A N/A N/A N/A N/A 0.203±0.08 N/A N/A N/A N/A N/A
ENSMUST00000155854 N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001932 IDA regulation of protein phosphorylation
GO:0003779 ISS actin binding
GO:0005515 IPI protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0005794 ISS Golgi apparatus
GO:0005829 ISS cytosol
GO:0005886 ISS plasma membrane
GO:0006260 IEA DNA replication
GO:0006275 IMP regulation of DNA replication
GO:0008017 IDA microtubule binding
GO:0010975 IDA regulation of neuron projection development
GO:0016020 ISS membrane
GO:0016477 ISS cell migration
GO:0030027 ISS lamellipodium
GO:0030032 ISS lamellipodium assembly
GO:0031410 ISS cytoplasmic vesicle
GO:0031929 IDA TOR signaling
GO:0032148 IDA activation of protein kinase B activity
GO:0032956 ISS regulation of actin cytoskeleton organization
GO:0035091 ISS phosphatidylinositol binding
GO:0042127 IMP regulation of cell proliferation
GO:0042803 ISS protein homodimerization activity
GO:0043422 IPI protein kinase B binding
GO:0061024 ISS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063681 coiled-coil domain containing 88A protein_coding Danio_rerio
ENSDARG00000078440 ccdc88aa coiled-coil domain containing 88Aa protein_coding Danio_rerio
ENSG00000115355 CCDC88A coiled-coil domain containing 88A protein_coding Homo_sapiens

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