C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032940 Rbm11 10090 + 16:75592844-75602829 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000046378 Rbm11-201 75592844-75601695 protein_coding
  ENSMUST00000114249 Rbm11-001 75592844-75602829 protein_coding
  ENSMUST00000114253 Rbm11-202 75592891-75602825 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046378ENSMUST00000114249ENSMUST00000114253
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046378 0.070±0.01 0.319±0.18 0.039±0.00 0.998±0.88 0.034±0.00 0.109±0.00 0.079±0.03 0.156±0.06 0.025±0.01 0.093±0.01 0.041±0.00 0.190±0.08 0.030±0.00 3.223±1.16
ENSMUST00000114249 N/A 0.176±0.00 N/A N/A N/A N/A N/A N/A N/A 0.091±0.00 0.002±0.00 N/A N/A N/A
ENSMUST00000114253 0.160±0.13 0.108±0.07 0.139±0.03 0.281±0.09 0.089±0.03 0.080±0.05 0.012±0.00 0.114±0.05 0.016±0.01 0.108±0.07 0.017±0.01 0.130±0.04 0.015±0.00 0.413±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MR CIL_0000MR_0003 CGP 16:75540514-75602829
CIL_00066K CIL_00066K_0002 CGP 16:75592844-75766821

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISO regulation of alternative mRNA splicing, via spliceosome
GO:0005634 ISO nucleus
GO:0005654 ISO nucleoplasm
GO:0006397 IEA mRNA processing
GO:0007275 IEA multicellular organismal development
GO:0008266 IDA poly(U) RNA binding
GO:0008380 IEA RNA splicing
GO:0016607 ISO nuclear speck
GO:0030154 IEA cell differentiation
GO:0034599 ISO cellular response to oxidative stress
GO:0042803 ISO protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090202 RBM11 RNA binding motif protein 11 protein_coding Danio_rerio
ENSG00000185272 RBM11 RNA binding motif protein 11 protein_coding Homo_sapiens

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