C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: forkhead box J3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032998 Foxj3 10090 + 4:119537004-119629119 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044564 Foxj3-001 119539661-119629119 protein_coding
  ENSMUST00000106310 Foxj3-002 119539688-119629119 protein_coding
  ENSMUST00000131413 Foxj3-003 119539707-119562910 retained_intron
  ENSMUST00000133097 Foxj3-006 119621342-119623412 processed_transcript
  ENSMUST00000137560 Foxj3-005 119539779-119573644 protein_coding
  ENSMUST00000138845 Foxj3-004 119539698-119588547 protein_coding
  ENSMUST00000160219 Foxj3-009 119540522-119573745 protein_coding
  ENSMUST00000161196 Foxj3-008 119539692-119604864 retained_intron
  ENSMUST00000162267 Foxj3-007 119539685-119588538 protein_coding
  ENSMUST00000176012 Foxj3-010 119537004-119573617 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044564ENSMUST00000106310
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044564 5.098±1.71 7.371±1.78 4.862±0.33 7.327±2.26 7.102±2.30 6.788±1.01 1.941±0.17 6.002±0.31 1.799±0.61 7.061±1.37 1.482±0.31 8.506±3.95 5.205±1.80 2.562±0.88
ENSMUST00000106310 2.845±1.21 2.611±0.78 4.412±0.00 5.649±2.45 3.298±0.91 3.569±1.29 4.604±0.87 3.410±0.74 2.110±0.64 4.215±1.06 4.996±0.33 6.351±2.62 3.552±0.95 1.328±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0002 VISTA 4:118938785-119540197

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075774 FOXJ3 Uncharacterized protein protein_coding Danio_rerio
ENSG00000198815 FOXJ3 forkhead box J3 protein_coding Homo_sapiens

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