C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: apolipoprotein L 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033576 Apol6 10090 + 15:77044729-77057107 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000127957 Apol6-003 77045075-77052348 protein_coding
  ENSMUST00000129468 Apol6-004 77045206-77050699 protein_coding
  ENSMUST00000139304 Apol6-007 77052751-77056044 processed_transcript
  ENSMUST00000142405 Apol6-002 77044729-77056298 nonsense_mediated_decay
  ENSMUST00000148197 Apol6-005 77045487-77046238 processed_transcript
  ENSMUST00000149569 Apol6-001 77045276-77057107 protein_coding
  ENSMUST00000152949 Apol6-006 77045278-77051320 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000127957ENSMUST00000129468ENSMUST00000149569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000127957 30.132±20.20 2.512±0.15 4.134±0.35 0.022±0.00 17.050±6.48 0.730±0.18 0.547±0.07 0.042±0.04 N/A 2.614±0.80 0.517±0.25 0.213±0.12
ENSMUST00000129468 N/A N/A N/A N/A N/A N/A 3.352±0.00 0.185±0.01 N/A N/A N/A N/A
ENSMUST00000149569 64.274±49.91 2.457±0.61 9.076±0.88 0.012±0.00 28.574±6.11 0.774±0.14 0.902±0.39 0.068±0.04 4.617±0.33 5.186±5.74 0.343±0.32 0.089±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099W CIL_00099W_0002 VISTA 15:76709335-77309403
CIL_00094Q CIL_00094Q_0002 VISTA 15:76736640-77338764
CIL_0008TT CIL_0008TT_0002 VISTA 15:76789079-77390092
CIL_0003GQ CIL_0003GQ_0002 CGP 15:77015489-77057107

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0006869 IEA lipid transport
GO:0008150 ND biological_process
GO:0008289 IEA lipid binding
GO:0042157 IEA lipoprotein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073718 APOL4 apolipoprotein L, 4 protein_coding Danio_rerio
ENSG00000221963 APOL6 apolipoprotein L, 6 protein_coding Homo_sapiens

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