C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fanconi anemia, complementation group D2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034023 Fancd2 10090 + 6:113531682-113597017 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036340 Fancd2-001 113531682-113597017 protein_coding
  ENSMUST00000101051 Fancd2-002 113531704-113538719 protein_coding
  ENSMUST00000123738 Fancd2-005 113551828-113562452 protein_coding
  ENSMUST00000124262 Fancd2-007 113583418-113586024 retained_intron
  ENSMUST00000129462 Fancd2-006 113568672-113574598 processed_transcript
  ENSMUST00000142453 Fancd2-004 113551824-113553990 processed_transcript
  ENSMUST00000143535 Fancd2-003 113531704-113537836 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036340ENSMUST00000123738ENSMUST00000124262ENSMUST00000129462ENSMUST00000143535
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036340 0.491±0.37 0.181±0.06 1.679±0.31 1.464±0.80 0.318±0.16 0.356±0.11 0.047±0.01 0.120±0.01 2.607±2.56 0.377±0.18 0.061±0.01 0.740±0.23 1.907±1.22 4.223±1.09
ENSMUST00000123738 N/A N/A N/A N/A N/A N/A 0.133±0.06 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124262 N/A 0.572±0.09 N/A N/A N/A 0.298±0.00 0.049±0.02 0.147±0.00 0.084±0.03 0.272±0.06 0.133±0.03 N/A N/A N/A
ENSMUST00000129462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.179±0.00 N/A N/A N/A
ENSMUST00000143535 N/A 0.496±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D5 CIL_0002D5_0002 CGP 6:113514874-113597017
CIL_00059I CIL_00059I_0002 CGP 6:113531682-113600715

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000793 IDA condensed chromosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005794 IEA Golgi apparatus
GO:0006281 IEA DNA repair
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007129 IMP synapsis
GO:0007275 IEA multicellular organismal development
GO:0007276 IMP gamete generation
GO:0010332 IEA response to gamma radiation
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0070182 IEA DNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053574 fancd2 Fanconi anemia, complementation group D2 protein_coding Danio_rerio
ENSG00000144554 FANCD2 Fanconi anemia, complementation group D2 protein_coding Homo_sapiens

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