C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ssu-2 homolog (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034387 Ssu2 10090 - 6:112359324-112388023 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060847 Ssu2-001 112359324-112388023 protein_coding
  ENSMUST00000123254 Ssu2-003 112369275-112375720 retained_intron
  ENSMUST00000143134 Ssu2-002 112368740-112377727 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060847ENSMUST00000123254ENSMUST00000143134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060847 0.489±0.04 N/A 0.353±0.00 0.012±0.00 0.399±0.23 0.990±0.65 0.289±0.03 0.553±0.07 0.014±0.00 0.249±0.09 0.222±0.07 0.971±0.27 0.169±0.13 0.436±0.12
ENSMUST00000123254 1.349±0.77 21.754±7.03 0.247±0.00 0.092±0.04 0.575±0.15 2.114±0.52 1.093±0.30 0.849±0.18 0.041±0.00 0.414±0.21 0.209±0.19 4.405±1.75 0.472±0.38 0.657±0.34
ENSMUST00000143134 0.377±0.00 6.749±2.31 0.102±0.00 0.036±0.00 0.108±0.00 0.798±0.17 0.348±0.00 0.464±0.02 0.008±0.00 0.268±0.00 0.175±0.04 6.834±3.43 0.232±0.19 0.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000001 CIL_000001_0002 CGP 6:112273758-112388023
CIL_0005S5 CIL_0005S5_0002 CGP 6:112359324-112472871

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0008150 ND biological_process
GO:0031072 IEA heat shock protein binding
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040938 SSUH2 ssu-2 homolog (C. elegans) protein_coding Danio_rerio
ENSG00000125046 SSUH2 ssu-2 homolog (C. elegans) protein_coding Homo_sapiens

Loading