C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bone morphogenetic protein/retinoic acid inducible neural specific 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035131 Brinp3 10090 + 1:146494760-146902472 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074622 Brinp3-001 146494760-146902471 protein_coding
  ENSMUST00000125331 Brinp3-002 146497738-146517554 retained_intron
  ENSMUST00000128345 Brinp3-004 146497704-146902466 nonsense_mediated_decay
  ENSMUST00000132847 Brinp3-003 146497614-146751780 protein_coding
  ENSMUST00000166814 Brinp3-201 146497687-146902472 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074622ENSMUST00000125331ENSMUST00000128345ENSMUST00000132847ENSMUST00000166814
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074622 N/A N/A N/A 1.174±0.65 N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A N/A
ENSMUST00000125331 N/A N/A N/A N/A N/A N/A N/A N/A 0.003±0.00 N/A N/A 0.012±0.00 N/A N/A
ENSMUST00000128345 0.245±0.01 0.073±0.00 N/A N/A 0.177±0.09 0.061±0.03 0.005±0.00 0.011±0.00 N/A N/A N/A 0.483±0.28 N/A N/A
ENSMUST00000132847 0.191±0.00 N/A 0.289±0.00 2.592±0.00 N/A 0.106±0.00 0.038±0.00 N/A 0.013±0.00 N/A N/A N/A 0.042±0.00 N/A
ENSMUST00000166814 0.148±0.01 0.075±0.01 0.458±0.03 4.212±0.90 0.118±0.03 0.027±0.01 0.008±0.00 0.031±0.02 0.011±0.01 0.030±0.00 0.008±0.00 0.368±0.33 0.024±0.02 1.255±0.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MQ CIL_0001MQ_0002 CGP 1:144752683-146902472

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005576 IEA extracellular region
GO:0005739 IEA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0007050 IEA cell cycle arrest
GO:0007399 IEA nervous system development
GO:0030425 IEA dendrite
GO:0043025 IEA neuronal cell body
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045786 IEA negative regulation of cell cycle
GO:0045930 IDA negative regulation of mitotic cell cycle
GO:0071300 IDA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061051 BRINP3 bone morphogenetic protein/retinoic acid inducible neural-specific 3 protein_coding Danio_rerio
ENSDARG00000075352 CABZ01077605.1 bone morphogenetic protein/retinoic acid inducible neural-specific 3 protein_coding Danio_rerio
ENSDARG00000076351 brinp3a bone morphogenetic protein/retinoic acid inducible neural-specific 3a protein_coding Danio_rerio
ENSG00000162670 BRINP3 bone morphogenetic protein/retinoic acid inducible neural-specific 3 protein_coding Homo_sapiens

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