C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA methyltransferase 10B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035601 Trmt10b 10090 + 4:45297127-45316131 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044673 Trmt10b-001 45297127-45316131 protein_coding
  ENSMUST00000107800 Trmt10b-002 45300434-45315142 protein_coding
  ENSMUST00000126972 Trmt10b-003 45300434-45315142 processed_transcript
  ENSMUST00000141659 Trmt10b-005 45300414-45308721 processed_transcript
  ENSMUST00000142785 Trmt10b-007 45300434-45304385 processed_transcript
  ENSMUST00000144781 Trmt10b-004 45297155-45304388 protein_coding
  ENSMUST00000145756 Trmt10b-006 45314098-45315048 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044673ENSMUST00000107800ENSMUST00000126972ENSMUST00000141659ENSMUST00000144781
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044673 0.850±0.23 0.693±0.45 3.109±0.41 4.063±2.49 1.073±0.53 1.140±0.53 0.710±0.12 1.472±0.39 1.269±0.81 1.154±0.32 1.074±0.16 1.660±0.98 1.927±1.01 2.293±0.73
ENSMUST00000107800 N/A N/A N/A 6.385±0.00 N/A N/A N/A N/A N/A N/A 0.614±0.14 6.309±0.00 3.937±0.51 5.435±5.94
ENSMUST00000126972 N/A N/A N/A N/A N/A N/A N/A N/A 0.405±0.00 0.913±0.00 1.003±0.29 2.416±1.94 4.636±1.19 N/A
ENSMUST00000141659 N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.493±0.16 N/A N/A
ENSMUST00000144781 N/A N/A N/A N/A N/A 0.691±0.00 N/A N/A N/A N/A 1.042±0.07 4.634±3.91 5.245±1.17 24.191±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TI CIL_0006TI_0002 CGP 4:45184875-45316131
CIL_00081A CIL_00081A_0002 VISTA 4:45205842-45807105
CIL_0006TH CIL_0006TH_0002 CGP 4:45297127-45342732

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060176 trmt10b tRNA methyltransferase 10 homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSG00000165275 TRMT10B tRNA methyltransferase 10 homolog B (S. cerevisiae) protein_coding Homo_sapiens

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