C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histocompatibility (minor) HA-1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035697 Hmha1 10090 + 10:80016653-80031472 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043311 Hmha1-004 80019653-80031468 protein_coding
  ENSMUST00000099501 Hmha1-001 80016653-80031472 protein_coding
  ENSMUST00000105373 Hmha1-002 80016916-80031469 protein_coding
  ENSMUST00000140974 Hmha1-003 80016739-80031469 retained_intron
  ENSMUST00000150022 Hmha1-005 80021743-80031462 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043311ENSMUST00000099501ENSMUST00000105373ENSMUST00000140974ENSMUST00000150022
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043311 6.890±4.27 1.513±0.31 4.552±0.48 0.464±0.04 11.436±2.63 3.167±0.37 0.940±0.56 1.520±0.07 2.520±1.42 13.026±1.13 0.476±0.39 5.642±2.33 1.598±0.36 0.857±0.16
ENSMUST00000099501 3.688±0.43 3.609±0.73 2.254±0.69 0.465±0.01 54.882±22.83 5.255±2.42 1.764±0.73 2.747±1.66 7.130±5.48 18.775±2.65 0.813±0.85 2.278±0.73 0.722±0.23 0.240±0.05
ENSMUST00000105373 1.596±0.22 1.266±0.00 N/A N/A N/A N/A N/A 2.058±0.00 1.261±0.66 N/A 0.720±0.56 N/A 0.486±0.00 N/A
ENSMUST00000140974 4.402±0.98 1.254±0.00 1.462±0.30 0.166±0.00 47.235±1.96 3.585±1.16 0.507±0.18 1.871±0.65 3.428±1.76 7.979±0.38 0.233±0.04 2.026±0.69 0.665±0.14 N/A
ENSMUST00000150022 2.757±0.00 2.061±0.66 N/A 0.339±0.00 31.367±1.34 3.166±0.54 2.078±1.08 2.090±0.31 1.810±1.05 8.761±0.54 0.161±0.03 2.305±0.00 0.504±0.00 0.172±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0000HU CIL_0000HU_0002 CGP 10:79996494-80031472
CIL_00030S CIL_00030S_0002 CGP 10:80016653-80039795

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005096 IEA GTPase activator activity
GO:0005622 IEA intracellular
GO:0016020 IEA membrane
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052496 HMHA1 (1 of 2) histocompatibility (minor) HA-1 protein_coding Danio_rerio
ENSDARG00000062049 hmha1 histocompatibility (minor) HA-1 protein_coding Danio_rerio
ENSG00000180448 HMHA1 histocompatibility (minor) HA-1 protein_coding Homo_sapiens

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