C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin, alpha 2, smooth muscle, aorta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035783 Acta2 10090 - 19:34241090-34255336 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039631 Acta2-201 34241090-34255336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039631
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039631 903.057±677.48 21.380±0.88 5.270±1.84 250.381±47.21 1261.605±179.42 249.774±61.43 67.945±28.35 8.600±6.37 291.292±45.12 7.057±3.13 1091.747±487.18 92.640±106.73 58.541±31.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001IX CIL_0001IX_0002 CGP 19:34192229-34255336
CIL_0001VG CIL_0001VG_0002 CGP 19:34241090-34327770

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005615 IEA extracellular space
GO:0005737 ISO cytoplasm
GO:0005856 IDA cytoskeleton
GO:0008217 IMP regulation of blood pressure
GO:0009615 IEA response to virus
GO:0014829 IMP vascular smooth muscle contraction
GO:0015629 IDA actin cytoskeleton
GO:0019901 IPI protein kinase binding
GO:0030485 IDA smooth muscle contractile fiber
GO:0043234 IEA protein complex
GO:0070062 IEA extracellular vesicular exosome
GO:0072144 IEA glomerular mesangial cell development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045180 acta2 actin, alpha 2, smooth muscle, aorta protein_coding Danio_rerio
ENSDARG00000079111 ACTC1 (2 of 2) actin, alpha 2, smooth muscle, aorta protein_coding Danio_rerio
ENSG00000107796 ACTA2 actin, alpha 2, smooth muscle, aorta protein_coding Homo_sapiens

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