C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1700011E24 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036557 1700011E24Rik 10090 - 17:87389571-87427741 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040609 1700011E24Rik-001 87389571-87427741 protein_coding
  ENSMUST00000186211 1700011E24Rik-005 87411205-87427708 protein_coding
  ENSMUST00000187078 1700011E24Rik-002 87389576-87427687 protein_coding
  ENSMUST00000189157 1700011E24Rik-004 87417490-87427635 processed_transcript
  ENSMUST00000189487 1700011E24Rik-003 87417500-87427635 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverMusclePlacentaTestisENSMUST00000040609ENSMUST00000186211ENSMUST00000187078ENSMUST00000189157
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Placenta Testis
ENSMUST00000040609 0.104±0.00 N/A 0.077±0.00 0.058±0.00 0.110±0.04 0.158±0.00 N/A 0.008±0.00 N/A N/A 155.750±64.47
ENSMUST00000186211 N/A 0.044±0.01 N/A N/A N/A 0.137±0.06 0.067±0.00 0.027±0.01 0.079±0.00 N/A N/A
ENSMUST00000187078 N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A 0.058±0.02 8.154±0.00
ENSMUST00000189157 N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D2 CIL_0008D2_0002 VISTA 17:87075116-87678515
CIL_0003T6 CIL_0003T6_0003 CGP 17:87282886-87427741

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089552 C13H2orf61 chromosome 2 open reading frame 61 protein_coding Danio_rerio
ENSG00000239605 C2orf61 chromosome 2 open reading frame 61 protein_coding Homo_sapiens

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