C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: enhancer trap locus 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036617 Etl4 10090 + 2:19909780-20810713 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045555 Etl4-001 20510047-20810524 protein_coding
  ENSMUST00000066509 Etl4-006 20519828-20810536 protein_coding
  ENSMUST00000114604 Etl4-019 20519791-20809885 protein_coding
  ENSMUST00000114606 Etl4-013 20737314-20810354 protein_coding
  ENSMUST00000114607 Etl4-012 20722625-20808190 protein_coding
  ENSMUST00000114608 Etl4-014 20737314-20810713 protein_coding
  ENSMUST00000114610 Etl4-007 19909780-20744816 protein_coding
  ENSMUST00000114614 Etl4-004 20510047-20810524 protein_coding
  ENSMUST00000114627 Etl4-201 20289913-20810535 protein_coding
  ENSMUST00000123383 Etl4-009 20548022-20662316 processed_transcript
  ENSMUST00000125556 Etl4-017 20713311-20743986 processed_transcript
  ENSMUST00000125772 Etl4-010 20722378-20803430 retained_intron
  ENSMUST00000129278 Etl4-008 20547980-20709545 processed_transcript
  ENSMUST00000131714 Etl4-003 20339824-20661918 protein_coding
  ENSMUST00000136870 Etl4-016 20559935-20709635 processed_transcript
  ENSMUST00000139531 Etl4-018 20798672-20808881 processed_transcript
  ENSMUST00000146488 Etl4-011 20722378-20785699 retained_intron
  ENSMUST00000146613 Etl4-005 20519811-20711878 retained_intron
  ENSMUST00000146881 Etl4-002 20289913-20662052 protein_coding
  ENSMUST00000156587 Etl4-015 20807454-20810524 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066509ENSMUST00000114604ENSMUST00000114606ENSMUST00000114608ENSMUST00000114614ENSMUST00000125772ENSMUST00000146488ENSMUST00000156587
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066509 3.064±0.94 1.289±0.46 3.195±0.20 0.536±0.11 2.183±0.62 2.592±0.00 2.728±0.35 1.636±0.35 0.463±0.10 4.057±0.34 2.237±0.60 2.287±1.10 9.197±5.88 N/A
ENSMUST00000114604 2.098±0.70 0.764±0.00 N/A 7.216±0.00 N/A N/A N/A N/A N/A N/A N/A 2.172±0.51 N/A N/A
ENSMUST00000114606 2.707±0.54 1.106±0.23 4.715±0.39 0.960±0.31 2.745±0.43 9.159±2.78 1.698±0.42 2.283±0.67 0.494±0.14 3.443±0.13 2.364±0.00 3.097±0.55 2.019±0.00 1.772±0.18
ENSMUST00000114608 N/A N/A N/A N/A N/A 6.946±2.98 N/A 1.080±0.00 0.381±0.19 N/A 4.110±1.97 3.063±1.18 8.065±5.52 1.204±0.32
ENSMUST00000114614 N/A 0.785±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125772 1.692±0.26 N/A N/A N/A 1.950±0.39 4.622±0.00 1.534±0.02 N/A 0.410±0.00 2.594±0.08 N/A 2.618±0.55 N/A 1.117±0.00
ENSMUST00000146488 N/A 2.509±0.69 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.106±0.70 N/A N/A
ENSMUST00000156587 7.718±1.21 4.162±0.95 7.001±0.81 3.581±1.13 5.685±0.78 N/A 5.286±0.69 4.220±0.76 0.971±0.36 10.708±0.78 7.109±1.56 6.086±1.02 6.430±1.15 3.612±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D2 CIL_0002D2_0002 CGP 2:19657752-20810713
CIL_0002D1 CIL_0002D1_0002 CGP 2:19909780-20968881

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0048706 IMP embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031658 si:ch211-207d6.2 si:ch211-207d6.2 protein_coding Danio_rerio
ENSDARG00000059333 si:ch211-285f17.1 si:ch211-285f17.1 protein_coding Danio_rerio
ENSG00000120549 KIAA1217 KIAA1217 protein_coding Homo_sapiens

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