C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SH3 domain containing ring finger 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037990 Sh3rf3 10090 + 10:58813359-59138916 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000133151 Sh3rf3-004 58814059-59007193 retained_intron
  ENSMUST00000135526 Sh3rf3-002 58813359-59050020 protein_coding
  ENSMUST00000148267 Sh3rf3-003 59065651-59104879 retained_intron
  ENSMUST00000152924 Sh3rf3-005 59080034-59104357 processed_transcript
  ENSMUST00000153031 Sh3rf3-001 58813458-59138916 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000133151ENSMUST00000135526ENSMUST00000148267ENSMUST00000152924ENSMUST00000153031
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000133151 N/A N/A N/A 11.946±0.00 N/A N/A N/A 0.223±0.00 N/A N/A 0.247±0.00 1.403±0.00 0.892±0.00 0.608±0.00
ENSMUST00000135526 N/A N/A N/A N/A 0.391±0.00 0.145±0.00 N/A 0.069±0.00 0.017±0.00 N/A N/A 0.709±0.22 N/A N/A
ENSMUST00000148267 N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A
ENSMUST00000152924 N/A N/A N/A N/A N/A 0.367±0.00 N/A 0.099±0.00 0.012±0.00 N/A N/A 1.128±0.00 N/A N/A
ENSMUST00000153031 0.308±0.20 0.109±0.03 0.527±0.05 4.126±1.71 0.302±0.10 0.173±0.06 0.200±0.04 0.062±0.03 0.010±0.01 2.196±0.17 0.076±0.02 0.517±0.18 0.084±0.05 0.081±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079N CIL_00079N_0002 CGP 10:58813359-59221847

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060401 SH3RF3 SH3 domain containing ring finger 3 protein_coding Danio_rerio
ENSDARG00000086664 SH3 domain containing ring finger 3 protein_coding Danio_rerio
ENSG00000172985 SH3RF3 SH3 domain containing ring finger 3 protein_coding Homo_sapiens

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