C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 43, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038178 Slc43a2 10090 + 11:75531694-75577575 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042561 Slc43a2-001 75531698-75577575 protein_coding
  ENSMUST00000108433 Slc43a2-002 75531698-75573883 protein_coding
  ENSMUST00000127226 Slc43a2-007 75532138-75545830 protein_coding
  ENSMUST00000134112 Slc43a2-005 75566703-75572412 retained_intron
  ENSMUST00000143035 Slc43a2-008 75531743-75545777 protein_coding
  ENSMUST00000145901 Slc43a2-004 75566007-75570189 processed_transcript
  ENSMUST00000149727 Slc43a2-009 75531694-75543323 protein_coding
  ENSMUST00000151891 Slc43a2-003 75560821-75567067 retained_intron
  ENSMUST00000152775 Slc43a2-010 75538008-75545764 processed_transcript
  ENSMUST00000155981 Slc43a2-006 75566816-75571790 processed_transcript
  ENSMUST00000169547 Slc43a2-201 75532112-75577570 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042561ENSMUST00000108433ENSMUST00000155981ENSMUST00000169547
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042561 3.485±0.90 3.207±0.64 2.100±0.34 2.505±0.77 4.405±1.66 1.818±0.85 0.979±0.22 20.171±1.09 0.659±0.23 8.134±1.79 0.619±0.26 3.360±1.14 2.621±1.52 1.889±0.00
ENSMUST00000108433 7.799±0.62 8.983±0.69 2.458±0.40 5.049±1.03 14.512±2.63 5.692±0.39 2.644±0.44 34.803±5.95 1.625±0.31 19.302±3.90 1.625±0.61 7.351±1.60 11.218±6.37 6.282±0.73
ENSMUST00000155981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.721±10.18 N/A
ENSMUST00000169547 2.236±0.45 1.591±0.13 0.632±0.11 3.296±0.53 3.245±0.85 1.310±0.37 0.951±0.40 7.578±1.37 0.668±0.24 5.494±0.87 0.726±0.17 1.886±0.69 2.415±1.03 2.222±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006H7 CIL_0006H7_0002 CGP 11:75531694-75628804

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IDA plasma membrane
GO:0015179 IDA L-amino acid transmembrane transporter activity
GO:0015807 IDA L-amino acid transport
GO:0016021 IEA integral component of membrane
GO:1902475 IEA L-alpha-amino acid transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036848 slc43a2a solute carrier family 43, member 2a protein_coding Danio_rerio
ENSDARG00000061120 slc43a2b solute carrier family 43, member 2b protein_coding Danio_rerio
ENSG00000167703 SLC43A2 solute carrier family 43 (amino acid system L transporter), member 2 protein_coding Homo_sapiens

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