C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GDP-mannose 4, 6-dehydratase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038372 Gmds 10090 - 13:31819579-32338712 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041859 Gmds-001 31819579-32338712 protein_coding
  ENSMUST00000178294 Gmds-002 32099227-32338585 retained_intron
  ENSMUST00000178313 Gmds-003 32157330-32227241 processed_transcript
  ENSMUST00000179717 Gmds-004 32225232-32338624 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041859ENSMUST00000179717
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041859 6.058±1.04 3.972±1.70 7.155±1.91 7.832±2.02 4.347±1.31 99.671±11.43 1.733±0.17 6.910±0.84 3.080±2.02 5.901±1.49 0.658±0.13 8.549±2.96 11.190±2.98 2.645±0.59
ENSMUST00000179717 6.978±1.65 N/A N/A N/A 6.019±1.76 171.169±16.95 N/A 7.073±1.16 1.556±0.13 4.238±1.24 N/A 10.543±2.62 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SP CIL_0005SP_0003 CGP 13:31806691-32338712
CIL_0005MS CIL_0005MS_0002 CGP 13:31819579-32783954

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0007219 ISS Notch signaling pathway
GO:0008446 ISS GDP-mannose 4,6-dehydratase activity
GO:0019673 ISS GDP-mannose metabolic process
GO:0042351 ISS 'de novo' GDP-L-fucose biosynthetic process
GO:0070062 IEA extracellular vesicular exosome
GO:0070401 ISS NADP+ binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026629 gmds GDP-mannose 4,6-dehydratase protein_coding Danio_rerio
ENSG00000112699 GMDS GDP-mannose 4,6-dehydratase protein_coding Homo_sapiens

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